Publications of Former Research Groups

Publications of Systems Biology (SBI)

Journal Article (125)

  1. Journal Article
    Klamt, S.; Saez-Rodriguez, J.; Gilles, E. D.: Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biology 1, 2 (2007)
  2. Journal Article
    Koschorreck, M.; Conzelmann, H.; Ebert, S.; Ederer, M.; Gilles, E. D.: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8, 336 (2007)
  3. Journal Article
    Krasnyk, M.; Ginkel, M.; Mangold, M.; Kienle, A.: Numerical analysis of higher order singularities in chemical process models. Computers and Chemical Engineering 31 (9), pp. 1100 - 1110 (2007)
  4. Journal Article
    Kremling, A.; Saez-Rodriguez, J.: Systems biology: An engineering perspective. Journal of Biotechnology 129 (2), pp. 329 - 351 (2007)
  5. Journal Article
    Kremling, A.: Comment on mathematical models which describe transcription and calculate the relationship between mRNA and protein expression ratio. Biotechnology and Bioengineering 96 (4), pp. 815 - 819 (2007)
  6. Journal Article
    Kremling, A.; Bettenbrock, K.; Gilles, E. D.: Analysis of global control of Escherichia coli carbohydrate uptake. BMC Systems Biology 1, 42 (2007)
  7. Journal Article
    Saez-Rodriguez, J.; Simeoni, L.; Lindquist, J.; Hemenway, R.; Bommhardt, U.; Arndt, B.; Haus, U. U.; Weismantel, R.; Gilles, E. D.; Klamt, S. et al.; Schraven, B.: A logical model provides insights into T cell receptor signaling. PLoS Computational Biology 3, e163 (2007)
  8. Journal Article
    Straube, R.; Ward, M. J.; Falcke, M.: Reaction Rate of Small Diffusing Molecules on a Cylindrical Membrane. Journal of Statistical Physics 129 (2), pp. 377 - 405 (2007)
  9. Journal Article
    Straube, R.; Falcke, M.: Reversible Clustering under the influence of a periodically modulated binding rate. Physical Review E 76, 010402(R) (2007)
  10. Journal Article
    Anders, A.; Lilie, H.; Franke, K.; Kapp, L.; Stelling, J.; Gilles, E. D.; Breunig, K. D.: The galactose switch in Kluyveromyces lactis depends on nuclear competition between Gal4 and Gal1 for Gal80 binding. The Journal of Biological Chemistry 281 (39), pp. 29337 - 29348 (2006)
  11. Journal Article
    Antoniukas, L.; Grammel, H.; Reichl, U.: Production of hantavirus Puumala nucleocapsid protein in Saccharomyces cerevisiae for vaccine and diagnostics. Journal of Biotechnology 124 (2), pp. 347 - 362 (2006)
  12. Journal Article
    Bettenbrock, K.; Fischer, S.; Kremling, A.; Jahreis, K.; Sauter, T.; Gilles, E. D.: A quantitative approach to catabolite repression in Escherichia coli. Journal of Biological Chemistry 281, pp. 2578 - 2584 (2006)
  13. Journal Article
    Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Kholodenko, B. N.; Gilles, E. D.: A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. BMC Bioinformatics 7, 34 (2006)
  14. Journal Article
    Gilles, E. D.: Signal transduction and regulation in bacteria. Computers and Chemical Engineering 30 (10-12 ), pp. 1687 - 1699 (2006)
  15. Journal Article
    Joshi, M.; Kremling, A.; Seidel-Morgenstern, A.: Model based statistical analysis of adsorption equilibrium data. Chemical Engineering Science 61 (23), pp. 7805 - 7818 (2006)
  16. Journal Article
    Joshi, M.; Seidel-Morgenstern, A.; Kremling, A.: Exploiting the bootstrap method for quantifying parameter confidence intervals in dynamical systems. Metabolic Engineering 8 (5), pp. 447 - 455 (2006)
  17. Journal Article
    Klamt, S.: Generalized concept of minimal cut sets in biochmical networks. Biosystems 83 (2-3 ), pp. 233 - 247 (2006)
  18. Journal Article
    Klamt, S.; Saez-Rodriguez, J.; Lindquist, J.; Simeoni, L.; Gilles, E. D.: A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics 7, p. 56 (2006)
  19. Journal Article
    Saez-Rodriguez, J.; Mirschel, S.; Hemenway, R.; Klamt, S.; Gilles, E. D.; Ginkel, M.: Visual set-up of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 7, 506 (2006)
  20. Journal Article
    Straube, R.; Flockerzi, D.; Hauser, M. J. B.: Sub-Hopf/fold-cycle bursting and its relation to (quasi-)periodic oscillations. Journal of Physics: Conference Series 55 , pp. 214 - 231 (2006)
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