Waschler, R.; Angeles-Palacios, O.; Ginkel, M.; Kienle, A.: Object-oriented modelling of large scale chemical engineering processes with ProMoT. Mathematical and Computer Modelling of Dynamical Systems 12 (1), pp. 5 - 18 (2006)

Conradi, C.; Saez-Rodriguez, J.; Gilles, E. D.; Raisch, J.: Using Chemical Reaction Network Theory to discard a Kinetic Mechanism Hypothesis. IEE Proceedings Systems Biology 152 (4), pp. 243 - 248 (2005)

Klamt, S.; Gagneur, J.; von Kamp, A.: Algorithmic approaches for computing elementary modes in large biochemical reaction networks. IEE Proceedings - Systems Biology 152 (4), pp. 249 - 255 (2005)

Lendeckel, U.; Müller , C.; Röcken, C.; Laube, B.; Träger, M.; Huth, C.; Klein, H. U.; Goette, A.: Expression of Opioid Receptor Subtypes and Their Ligands in Fibrillating Human Atria. PACE 28 (S1), pp. S275 - S279 (2005)

Mangold, M.; Angeles-Palacios, O.; Ginkel, M.; Kremling, A.; Waschler, R.; Kienle, A.; Gilles, E. D.: Computer Aided Modeling of Chemical and Biological Systems: Methods, Tools, and Applications. Industrial and Engineering Chemistry Research 44 (8), pp. 2579 - 2591 (2005)

Nutsch, T.; Oesterhelt, D.; Gilles, E. D.; Marwan, W.: A Quantitative Model of the Switch Cycle of an Archaeal Flagellar Motor and its Sensory Control. Biophysical Journal 89 (4), pp. 2307 - 2323 (2005)

Saez-Rodriguez, J.; Kremling, A.; Gilles, E. D.: Dissecting the Puzzle of Life: Modularization of Signal Transduction Networks. Computers & Chemical Engineering 29, pp. 619 - 629 (2005)

Straube, R.; Flockerzi, D.; Mueller, S. C.; Hauser, M. J. B.: Reduction of Chemical Reaction Networks Using Quasi-Integrals. Journal of Physical Chemistry A 109, pp. 441 - 450 (2005)

Straube, R.; Flockerzi, D.; Mueller, S. C.; Hauser, M. J. B.: The Origin of Bursting pH Oscillations in an Enzyme Model Reaction System. Physical Review E 72, p. 066205 (2005)

Zak, D. E.; Stelling, J.; Doyle, F. J.: Sensitivity analysis of oscillatory (bio)chemical systems. Computers and Chemical Engineering 29, pp. 663 - 673 (2005)

Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Bullinger, E.; Allgöwer, F.; Gilles, E. D.: Reduction of Mathematical Models of Signal Transduction Networks: Simulation-Based Approach Applied to EGF Receptor Signalling. Systems Biology 1, pp. 159 - 169 (2004)

Eissing, T.; Conzelmann, H.; Gilles, E. D.; Allgöwer, F.; Bullinger, E.; Scheurich, P.: Bistability Analyses of a Caspase Activation Model for Receptor-induced Apoptosis. The Journal of Biological Chemistry 279, pp. 36892 - 36897 (2004)

Gagneur, J.; Klamt, S.: Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinformatics 5, 175 (2004)

Gilles, E. D.: Komplexität in Technik und Biologie. Akademie-Journal: Magazin der Union der Deutschen Akademien der Wissenschaften, pp. 55 - 61 (2004)

Klamt, S.; Gilles, E. D.: Minimal cut sets in biochemical reaction networks. Bioinformatics 20, pp. 226 - 234 (2004)

Kremling, A.; Ginkel, M.; Klamt, S.; Gilles, E. D.: Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme. it - Information Technology 46, pp. 12 - 19 (2004)

Kremling, A.; Heermann, R.; Centler, F.; Jung, K.; Gilles, E. D.: Analysis of two-component signal transduction by mathematical modeling using the KdpD/KdpE system of Escherichia coli. Biosystems 78 (1-3), pp. 23 - 37 (2004)

Kremling, A.; Kremling, S.; Gadkar, K.; Doyle, F. J.; Sauter, T.; Bullinger, E.; Allgoewer, F.; Gilles, E. D.: A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions. Genome Research 14 (9), pp. 1773 - 1785 (2004)

Kremling, A.; Kremling, S.; Sauter, T.; Bettenbrock, K.; Gilles, E. D.: Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism. Biosystems 73 (1), pp. 57 - 71 (2004)

Mangold, M.; Ginkel, M.; Gilles, E. D.: A model library for membrane reactors implemented in the process modelling tool ProMoT. Computers and Chemical Engineering 28 (3), pp. 319 - 332 (2004)