Publications of Former Research Groups

Publications of Systems Biology (SBI)

Journal Article (17)

  1. 2008
    Journal Article
    Antoniukas, L.; Grammel, H.; Sasnauskas, K.; Reichl, U.: Profiling of external metabolites during production of hantavirus nucleocapsid protein with recombinant Saccharomyces cerevisiae. Biotechnology Letters 30 (3), pp. 415 - 420 (2008)
  2. Journal Article
    Bagyan, S.; Mair, T.; Suchorski, Y.; Hauser, M. J. B.; Straube, R.: Spatial Desynchronization of Glycolytic Waves as Revealed by Karhunen−Loeve Analysis. Journal of Physical Chemistry B 112 (45), pp. 14334 - 14341 (2008)
  3. Journal Article
    Conzelmann, H.; Fey, D.; Gilles, E. D.: Exact model reduction of combinatorial reaction networks. BMC Systems Biology 2, p. 78 (2008)
  4. Journal Article
    Ederer, M.; Gilles, E. D.: Thermodynamic Constraints in Kinetic Modeling: Thermodynamic-Kinetic Modeling in Comparison to Other Approaches. Engineering in Life Sciences 8 (5), pp. 467 - 476 (2008)
  5. Journal Article
    Feuer, R.; Ederer, M.; Gilles, E. D.; Sprenger, G. A.; Sawodny, O.; Sauter, T.: Analyse der evolutiven Adaptation am Beispiel einer pyruvat-auxotrophen Escherichia coli-Mutante. at - Automatisierungstechnik 56 (5), pp. 257 - 268 (2008)
  6. Journal Article
    Franke, R.; Mueller, M.; Wundrack, N.; Gilles, E. D.; Klamt, S.; Kaehne, T.; Naumann, M.: Host-pathogen systems biology: Logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction. BMC Systems Biology 2, 4 (2008)
  7. Journal Article
    Grammel, H.; Ghosh, R.: Redox state dynamics of ubiquinone-10 imply cooperative regulation of photosynthetic membrane expression in Rhodospirillum rubrum. Journal of Bacteriology 190 (14), pp. 4912 - 4921 (2008)
  8. Journal Article
    Haus, U.-U.; Klamt, S.; Stephen, T.: Computing knock-out strategies in metabolic networks. Journal of Computational Biology 15 (3), pp. 259 - 268 (2008)
  9. Journal Article
    Klamt, S.; Grammel, H.; Straube, R.; Ghosh, R.; Gilles, E. D.: Modeling the electron transport chain of purple non-sulfur bacteria. Molecular Systems Biology 4, 156 (2008)
  10. Journal Article
    Koschorreck, M.; Gilles, E. D.: Mathematical modeling and analysis of insulin clearance in vivo. BMC Systems Biology 2, p. 43 (2008)
  11. Journal Article
    Koschorreck, M.; Gilles, E. D.: ALC: automated reduction of rule-based models. BMC Systems Biology 2, 91 (2008)
  12. Journal Article
    Kremling, A.; Bettenbrock, K.; Gilles, E. D.: A feed-forward loop guarantees robust behavior in Echerichia coli carbohydrate uptake. Bioinformatics 24, pp. 704 - 710 (2008)
  13. Journal Article
    Kremling, A.: Modellierung und Modellanalyse in der Systembiologie am Beispiel der Kohlenhydrataufnahme bei Escherichia coli. at - Automatisierungstechnik 56 (5), pp. 250 - 256 (2008)
  14. Journal Article
    Motz, S.; Mannal, S.; Gilles, E. D.: State estimation in batch crystallization using reduced population models. Journal of Process Control 18 (3-4), pp. 361 - 374 (2008)
  15. Journal Article
    Saez-Rodriguez, J.; Gayer, S.; Ginkel, M.; Gilles, E. D.: Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules. Bioinformatics 24 (16), pp. i213 - i219 (2008)
  16. Journal Article
    Saez-Rodriguez, J.; Hammerle-Fickinger, A.; Dalal, O.; Klamt, S.; Gilles, E. D.; Conradi, C.: Multistability of signal transduction motifs. IET Systems Biology 2 (2), pp. 80 - 93 (2008)
  17. Journal Article
    Wang, X. Q.; Simeoni, L.; Lindquist, J. A.; Saez-Rodriguez, J.; Ambach, A.; Gilles, E. D.; Kliche, S.; Schraven, B.: Dynamics of proximal signaling events after TCR/CD8-mediated induction of proliferation or apoptosis in mature CD8+ T cells. Journal of Immunology 180 (10), pp. 6703 - 6712 (2008)

Book Chapter (1)

  1. 2008
    Book Chapter
    Conzelmann, H.; Gilles, E. D.: Dynamic pathway modeling of signal transduction networks: a domain-oriented approach. In: Functional Proteomics, pp. 559 - 578 (Eds. Thompson, J. D.; Schaeffer-Reiss, C.; Ueffing, M.). Humana Press, Totowa, NJ (2008)

Thesis - PhD (1)

  1. 2008
    Thesis - PhD
    Conzelmann, H.: Mathematical Modeling of Biochemical Signal Transduction Pathways in Mammalian Cells – A Domain-Oriented Approach to Reduce Combinatorial Complexity. Dissertation, 136 pp., Universität, Stuttgart (2008)

Thesis - Diploma (2)

  1. 2008
    Thesis - Diploma
    Aschenbrenner, E.: Layout strukturierter Modelle am Beispiel von Daten aus der Systembiologie. Diploma, 84 pp., Otto-von-Guericke Universität, Magdeburg (2008)
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