Publications of Former Research Groups

Publications of Systems Biology (SBI)

Journal Article (9)

  1. 2005
    Journal Article
    Conradi, C.; Saez-Rodriguez, J.; Gilles, E. D.; Raisch, J.: Using Chemical Reaction Network Theory to discard a Kinetic Mechanism Hypothesis. IEE Proceedings Systems Biology 152 (4), pp. 243 - 248 (2005)
  2. Journal Article
    Klamt, S.; Gagneur, J.; von Kamp, A.: Algorithmic approaches for computing elementary modes in large biochemical reaction networks. IEE Proceedings - Systems Biology 152 (4), pp. 249 - 255 (2005)
  3. Journal Article
    Lendeckel, U.; Müller , C.; Röcken, C.; Laube, B.; Träger, M.; Huth, C.; Klein, H. U.; Goette, A.: Expression of Opioid Receptor Subtypes and Their Ligands in Fibrillating Human Atria. PACE 28 (S1), pp. S275 - S279 (2005)
  4. Journal Article
    Mangold, M.; Angeles-Palacios, O.; Ginkel, M.; Kremling, A.; Waschler, R.; Kienle, A.; Gilles, E. D.: Computer Aided Modeling of Chemical and Biological Systems: Methods, Tools, and Applications. Industrial and Engineering Chemistry Research 44 (8), pp. 2579 - 2591 (2005)
  5. Journal Article
    Nutsch, T.; Oesterhelt, D.; Gilles, E. D.; Marwan, W.: A Quantitative Model of the Switch Cycle of an Archaeal Flagellar Motor and its Sensory Control. Biophysical Journal 89 (4), pp. 2307 - 2323 (2005)
  6. Journal Article
    Saez-Rodriguez, J.; Kremling, A.; Gilles, E. D.: Dissecting the Puzzle of Life: Modularization of Signal Transduction Networks. Computers & Chemical Engineering 29, pp. 619 - 629 (2005)
  7. Journal Article
    Straube, R.; Flockerzi, D.; Mueller, S. C.; Hauser, M. J. B.: Reduction of Chemical Reaction Networks Using Quasi-Integrals. Journal of Physical Chemistry A 109, pp. 441 - 450 (2005)
  8. Journal Article
    Straube, R.; Flockerzi, D.; Mueller, S. C.; Hauser, M. J. B.: The Origin of Bursting pH Oscillations in an Enzyme Model Reaction System. Physical Review E 72, p. 066205 (2005)
  9. Journal Article
    Zak, D. E.; Stelling, J.; Doyle, F. J.: Sensitivity analysis of oscillatory (bio)chemical systems. Computers and Chemical Engineering 29, pp. 663 - 673 (2005)

Book Chapter (2)

  1. 2005
    Book Chapter
    Eils, J.; Lawerenz, C.; Astrahantseff, K.; Ginkel, M.; Eils, R.: Databases for Systems Biology. In: Computational Systems Biology, pp. 15 - 38 (Eds. Kriete, A.; Eils, R.). Elsevier, Amsterdam [u.a.] (2005)
  2. Book Chapter
    Kremling, A.; Stelling, J.; Bettenbrock, K.; Kremling, S.; Gilles, E. D.: Metabolic networks: Biology meets engineering sciences. In: Systems Biology: Definitions and Perspectives, pp. 215 - 234 (Eds. Alberghina, L.; Westerhoff, H. V.). Springer, Berlin [u.a.] (2005)

Conference Paper (4)

  1. 2005
    Conference Paper
    Backfisch, T.; Pruteanu, M.; Hengge, R.; Gilles, E. D.: Mathematical Model of rpoS Regulation in E. coli. In: Foundations of Systems Biology in Engineering, FOSBE 2005, pp. 239 - 242. FOSBE 2005 (Foundations of Systems Biology in Engineering), Santa Barbara, USA, August 07, 2005 - August 10, 2005. (2005)
  2. Conference Paper
    Conradi, C.; Saez-Rodriguez, J.; Gilles, E. D.; Raisch, J.: Using chemical reaction network theory to discard a kinetic mechanism hypothesis. In: Foundations of Systems Biology in Engineering, FOSBE 2005, pp. 325 - 328. Foundations of Systems Biology in Engineering, Santa Barbara, August 07, 2005 - August 10, 2005. (2005)
  3. Conference Paper
    Krasnyk, M.; Ginkel, M.; Mangold, M.; Kienle, A.: Numerical Analysis of Higher-Order Singularities in Complex Chemical Process Models in ProMoT. In: European Symposium on Computer Aided Process Engineering - 15, pp. 223 - 228 (Eds. Puigjaner, L.; Espuña, A.). 15th European Symposium on Computer Aided Process Engineering , Barcelona, Spain, May 29, 2005 - June 01, 2005. Elsevier, Amsterdam (2005)
  4. Conference Paper
    Saez-Rodriguez, J.; Conzelmann, H.; Sauter, T.; Kholodenko, B. N.; Gilles, E. D.: Domain-oriented and modular approaches to the reduction of mathematical models of signaling networks. In: 4th Workshop on Computation of Biochemical Pathways and Genetic Networks: a BioSim Event, pp. 13 - 20 (Eds. Kummer, U.; Pahle, J.; Surovtsova, I.; Zobeley, J.). 4th Workshop on Computation of Biochemical Pathways and Genetic Networks, Heidelberg, Germany, September 12, 2005 - September 13, 2005. (2005)

Thesis - PhD (1)

  1. 2005
    Thesis - PhD
    Klamt, S.: Strukturelle Analyse von Stoffwechselnetzen illustriert am bakteriellen Redox- und Zentralstoffwechsel. Dissertation, 194 pp., Shaker, Aachen (2005)

Thesis - Diploma (1)

  1. 2005
    Thesis - Diploma
    Hammerle, A.: Analysis of multistability of signal transduction modules. Diploma, Otto-von-Guericke Universität, Magdeburg (2005)
 
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