Publications of Former Research Groups

Publications of Systems Biology (SBI)

Journal Article (12)

  1. Journal Article
    Beste, D. J.; Hooper, T.; Stewart, G.; Bonde, B.; Avignone-Rossa, C.; Bushell, M. E.; Wheeler, P.; Klamt, S.; Kierzek, A. M.; McFadden, J.: GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism. Genome Biology 8, R89 (2007)
  2. Journal Article
    Bettenbrock, K.; Sauter, T.; Jahreis, K.; Kremling, A.; Lengeler, J. W.; Gilles, E. D.: Correlation between growth rates, EIIACrr phosphorylation, and intracellular cAMP levels in Escherichia coli K-12. Journal of Bacteriology 189 (19), pp. 6891 - 6900 (2007)
  3. Journal Article
    Ederer, M.; Gilles, E. D.: Thermodynamically feasible kinetic models of reaction networks. Biophysical Journal 92 (6), pp. 1846 - 1857 (2007)
  4. Journal Article
    Klamt, S.; Saez-Rodriguez, J.; Gilles, E. D.: Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biology 1, 2 (2007)
  5. Journal Article
    Koschorreck, M.; Conzelmann, H.; Ebert, S.; Ederer, M.; Gilles, E. D.: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8, 336 (2007)
  6. Journal Article
    Krasnyk, M.; Ginkel, M.; Mangold, M.; Kienle, A.: Numerical analysis of higher order singularities in chemical process models. Computers and Chemical Engineering 31 (9), pp. 1100 - 1110 (2007)
  7. Journal Article
    Kremling, A.; Saez-Rodriguez, J.: Systems biology: An engineering perspective. Journal of Biotechnology 129 (2), pp. 329 - 351 (2007)
  8. Journal Article
    Kremling, A.: Comment on mathematical models which describe transcription and calculate the relationship between mRNA and protein expression ratio. Biotechnology and Bioengineering 96 (4), pp. 815 - 819 (2007)
  9. Journal Article
    Kremling, A.; Bettenbrock, K.; Gilles, E. D.: Analysis of global control of Escherichia coli carbohydrate uptake. BMC Systems Biology 1, 42 (2007)
  10. Journal Article
    Saez-Rodriguez, J.; Simeoni, L.; Lindquist, J.; Hemenway, R.; Bommhardt, U.; Arndt, B.; Haus, U. U.; Weismantel, R.; Gilles, E. D.; Klamt, S. et al.; Schraven, B.: A logical model provides insights into T cell receptor signaling. PLoS Computational Biology 3, e163 (2007)
  11. Journal Article
    Straube, R.; Ward, M. J.; Falcke, M.: Reaction Rate of Small Diffusing Molecules on a Cylindrical Membrane. Journal of Statistical Physics 129 (2), pp. 377 - 405 (2007)
  12. Journal Article
    Straube, R.; Falcke, M.: Reversible Clustering under the influence of a periodically modulated binding rate. Physical Review E 76, 010402(R) (2007)

Conference Paper (2)

  1. Conference Paper
    Ederer, M.; Gilles, E. D.: Thermodynamic-Kinetic Modeling and Electrical Engineering. In: Proceedings / 2nd Conference Foundations of Systems Biology in Engineering, pp. 135 - 140 (Eds. Allgöwer, F.; Reuss, M.). Foundations of Systems Biology in Engineering (FOSBE), Stuttgart, Germany, September 09, 2007 - September 12, 2007. (2007)
  2. Conference Paper
    Feuer, R.; Ederer, M.; Trachtmann, N.; Sauter, T.; Gilles, E. D.; Sprenger, G.; Sawodny, O.: Methods for analysis of evolutive adaptation of E. coli. In: Proceedings of SICE annual conference, pp. 1359 - 1365. International Conference on Instrumentation, Control and Information Technology (SICE 2007), Takamatsu, Japan, September 17, 2007 - September 20, 2007. (2007)

Thesis - PhD (1)

  1. Thesis - PhD
    Saez-Rodriguez, J.: Modular Analysis of Signal Transduction Networks. Dissertation, 193 pp., Otto-von-Guericke Universität, Magdeburg (2007)

Thesis - Diploma (1)

  1. Thesis - Diploma
    Vallejo Perez, S.: Metabolic Flux Analysis of Primary Human liver cells. Diploma, Otto-von-Guericke-Universität, Magdeburg (2007)
 
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