Publications of Former Research Groups

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Journal Article (7)

  1. 2014
    Journal Article
    Ederer, M.; Steinsiek, S.; Stagge, S.; Rolfe, M. D.; TerBeek, A.; Knies, D.; Teixeira de Mattos, M. J.; Sauter , T.; Green , J.; Poole, R. K. et al.; Bettenbrock, K.; Sawodny, O.: A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen. Frontiers in Microbiology 5, 124, p. 124 (2014)
  2. Journal Article
    Henkel, S.; Beek, A. T.; Steinsiek, S.; Stagge, S.; Bettenbrock, K.; M. Joost Teixeira de Mattos, M.; Sawodny, O.; Ederer, M.; Sauter, T.: Basic Regulatory Principles of Escherichia coli's Electron Transport Chain for Varying Oxygen Conditions. PLoS One 9 (9), p. e107640 (2014)
  3. 2009
    Journal Article
    Schlatter, R.; Schmich, K.; Avalos Vizcarra, I.; Scheurich, P.; Sauter, T.; Borner, C.; Ederer, M.; Merfort, I.; Sawodny, O.: ON/OFF and Beyond - A Boolean Model of Apoptosis. PLoS Computational Biology 5 (12), p. e1000595 (2009)
  4. 2008
    Journal Article
    Ederer, M.; Gilles, E. D.: Thermodynamic Constraints in Kinetic Modeling: Thermodynamic-Kinetic Modeling in Comparison to Other Approaches. Engineering in Life Sciences 8 (5), pp. 467 - 476 (2008)
  5. Journal Article
    Feuer, R.; Ederer, M.; Gilles, E. D.; Sprenger, G. A.; Sawodny, O.; Sauter, T.: Analyse der evolutiven Adaptation am Beispiel einer pyruvat-auxotrophen Escherichia coli-Mutante. at - Automatisierungstechnik 56 (5), pp. 257 - 268 (2008)
  6. 2007
    Journal Article
    Ederer, M.; Gilles, E. D.: Thermodynamically feasible kinetic models of reaction networks. Biophysical Journal 92 (6), pp. 1846 - 1857 (2007)
  7. Journal Article
    Koschorreck, M.; Conzelmann, H.; Ebert, S.; Ederer, M.; Gilles, E. D.: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8, 336 (2007)

Conference Paper (3)

  1. 2007
    Conference Paper
    Ederer, M.; Gilles, E. D.: Thermodynamic-Kinetic Modeling and Electrical Engineering. In: Proceedings / 2nd Conference Foundations of Systems Biology in Engineering, pp. 135 - 140 (Eds. Allgöwer, F.; Reuss, M.). Foundations of Systems Biology in Engineering (FOSBE), Stuttgart, Germany, September 09, 2007 - September 12, 2007. (2007)
  2. Conference Paper
    Feuer, R.; Ederer, M.; Trachtmann, N.; Sauter, T.; Gilles, E. D.; Sprenger, G.; Sawodny, O.: Methods for analysis of evolutive adaptation of E. coli. In: Proceedings of SICE annual conference, pp. 1359 - 1365. International Conference on Instrumentation, Control and Information Technology (SICE 2007), Takamatsu, Japan, September 17, 2007 - September 20, 2007. (2007)
  3. 2001
    Conference Paper
    Kremling, A.; Sauter, T.; Bullinger, E.; Ederer, M.; Allgöwer, F.; Gilles, E. D.: Biosystems Engineering: Applying methods from systems theory to biological systems. In: Proceedings of the Second International Conference on Systems Biology, pp. 282 - 290 (Eds. Yi, T.-M.; Hucka, M.; Morohashi, M.; Kitano, H.). International Conference on Systems Biology 2001, Pasadena, CA, U.S.A., November 04, 2001 - November 07, 2001. (2001)

Talk (3)

  1. 2008
    Talk
    Ederer, M.; Gilles, E. D.: Thermodynamic-Kinetic Modeling of Complex Formation in Signal Transduction. 9th International Conference on Systems Biology (ICSB 2008), Göteborg, Sweden (2008)
  2. Talk
    Ederer, M.; Sauter, T.; Bettenbrock, K.; Sawodny, O.; Gilles, E. D.: Thermodynamically-Consistent Reduced-Order Modeling of the Oxygen Response of Escherichia coli. 9th International Conference on Systems Biology (ICSB 2008), Göteborg, Sweden (2008)
  3. Talk
    Ederer, M.; Gilles, E. D.: Thermodynamic-Kinetic Modeling. 2nd International Symposium on Biothermodynamics, Frankfurt am Main, Germany (2008)

Poster (1)

  1. 2008
    Poster
    Steinsiek, S.; Stagge, S.; Bettenbrock, K.; Ederer, M.; Sawodny, O.; Gilles, E. D.: Metabolism-Wide Oxygen Responses: Experimental and Modelling Approaches. SysMo - Evaluation Conference, Bad Honnef, Germany (2008)

Thesis - PhD (1)

  1. 2009
    Thesis - PhD
    Ederer, M.: Thermokinetic Modeling and Model Reduction of Reaction Networks. Dissertation, 193 pp., Universität, Stuttgart (2009)
 
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