Publications of the Max Planck Institute

Journal Article

Al-Shaibani, M. A. S.; Sakoleva, T.; Živković, L. A.; Austin, H. P.; Dörr, M.; Hilfert, L.; Haak, E.; Bornscheuer, U. T.; Vidaković-Koch, T.: Product Distribution of Steady–State and Pulsed Electrochemical Regeneration of 1,4‐NADH and Integration with Enzymatic Reaction. ChemistryOpen, e202400064 (2024)

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Arigoni-Affolter, I.; Losfeld, M.-E.; Hennig, R.; Rapp, E.; Aebi, M.: A hierarchical structure in the N-glycosylation process governs the N-glycosylation output: prolonged cultivation induces glycoenzymes expression variations that are reflected in the cellular N-glycome but not in the protein and site-specific glycoprofile of CHO cells. Glycobiology 34 (8), cwae045 (2024)

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Bauer, J.; Klamt, S.: OptMSP: A Toolbox for Designing Optimal Multi-Stage (Bio)Processes. Journal of Biotechnology 383, pp. 94 - 102 (2024)

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Journal Article

Bauer, S.; Benner, P.; Bereau, T.; Blum, V.; Boley, M.; Carbogno, C.; A. Catlow, C. R.; Dehm, G.; Eibl, S.; Ernstorfer, R. et al.; Fekete, Á.; Foppa, L.; Fratzl, P.; Freysoldt, C.; Gault, B.; M. Ghiringhelli, L.; Sajal, K. G.; Gladyshev, A.; Goyal, P. K.; Hattrick-Simpers, J.; Kabalan, L.; Karpov, P.; S. Khorrami, M.; Koch, C.; Kokott, S.; Kosch, T.; Kowalec, I.; Kremer, K.; Leitherer, A.; Li, Y.; Liebscher, C. H.; Logsdail, A. J.; Lu, Z.; Luong, F.; Marek, A.; Merz, F.; R. Mianroodi, J.; Neugebauer, J.; Purcell, T. A. R.; Raabe, D.; Rampp, M.; Rossi, M.; Rost, J.-M.; Saalmann, U.; Saxena, A.; Sbailo, L.; Scheffler, M.; Scheidgen, M.; Schloz, M.; Schmidt, D. F.; Teshuva, S.; Trunschke, A.; Wei, Y.; Weikum, G.; Xian, R. P.; Yao, Y.; Zhao, M.: Roadmap on Data-Centric Materials Science. Modelling and Simulation in Materials Science and Engineering 32, 063301,90 pages (2024)

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External

Journal Article

Behrendt, G.; Vlachonikolou, M.; Tietgens, H.; Bettenbrock, K.: Construction and comparison of different vehicles for heterologous gene expression in Zymomonas mobilis. Microbial Biotechnology 17 (1), e14381 (2024)

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External

Journal Article

Benner, P.; Chuiko, S.; Nesmelova, O.V.: Adomian decomposition method in the theory of nonlinear boundary-value problems unsolved with respect to the derivative. Nonlinear Oscillations (accepted)

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Benner, P.; Chuiko, S.; Zuyev, A.: Iterative Schemes for Periodic Boundary Value Problems with Switchings. Journal of Mathematical Sciences 278 (6), pp. 932 - 949 (2024)

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Benner, P.; Goyal, P. K.; Pontes Duff, I.: Identification of Dominant Subspaces for Linear Structured Parametric Systems and Model Reduction. International Journal for Numerical Methods in Engineering, e7496 (2024)

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Benner, P.; Goyal, P. K.; Van Dooren, P.: Parameterized Interpolation of Passive Systems. SIAM Journal on Matrix Analysis and Applications 45 (2), pp. 1035 - 1053 (2024)

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Benner, P.; Gugercin, S.; Werner, S. W. R.: Structured Interpolation for Multivariate Transfer Functions of Quadratic-Bilinear Systems. Advances in Computational Mathematics 50, 18 (2024)

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Boichuk, O.; Chuiko, S.; Diachenko, D.: Adomian’s Decomposition Method in the Theory of Nonlinear Autonomous Boundary-Value Problems. Ukrainian Mathematical Journal 75, pp. 1203 - 1218 (2024)

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Journal Article

Böttinger, K.; Regl, C.; Schäpertöns, V.; Rapp, E.; Wohlschlager, T.; Huber, C. G.: “Small is beautiful” – examining reliable determination of low- abundant therapeutic antibody glycovariants. Journal of Pharmaceutical and Biomedical Analysis, 100982 (2024)

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Journal Article

Chellappa, S.; Feng, L.; Benner, P.: Accurate Error Estimation for Model Reduction of Nonlinear Dynamical Systems via Data-enhanced Error Closure. Computer Methods in Applied Mechanics and Engineering 420, 116712 (2024)

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Journal Article

Chuiko, S.; Chuiko, O.; Diachenko, D.: On Approximate Solutions of a Nonlinear Periodic Boundary-Value Problem with Switching in the Case of Parametric Resonance by the Newton–Kantorovich Method. Journal of Mathematical Sciences 279, pp. 438 - 453 (2024)

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Chuiko, S.; Nesmelova, O. V.: On the Reduction of an Autonomous Nonlinear Boundary Value Problem Unsolved with Respect to the Derivative to the First-Order Critical Case. Journal of Mathematical Sciences 279, pp. 1 - 24 (2024)

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Journal Article

Coux, O.; Farràs, R.; Abbas, M.; Barrio, R.; Blattner, C.; Brix, K.; Chachami, G.; Chevet, E.; Clague, M. J.; Dantuma, N. et al.; Rankov, A. D.; Galdeano, C.; Giglione, C.; Glickman, M. H.; Lalmanach, G.; Lindon, C.; Matthiesen, R.; Meroni, G.; Pick, E.; Poidevin, L.; Rivas, C.; Rodriguez, M. S.; Sammler, E.; Shiber, A.; Skoulakis, E. M.C.; Stein, M.; Vertegaal, A. C.O.: ProteoCure: A European network to fine-tune the proteome. Biochimie (2024)

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Journal Article

Espinel-Rios, S.; Behrendt, G.; Bauer, J.; Morabito, B.; Pohlodek, J.; Schütze, A.; Findeisen, R.; Bettenbrock, K.; Klamt, S.: Experimentally implemented dynamic optogenetic optimization of ATPase expression using knowledge-based and Gaussian-process-supported models. Process Biochemistry (143), pp. 174 - 185 (2024)

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Journal Article

Espinel-Rios, S.; Morabito, B.; Pohlodek, J.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Toward a modeling, optimization, and predictive control framework for fed-batch metabolic cybergenetics. Biotechnology and Bioengineering 121 (1), pp. 366 - 379 (2024)

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Feng, L.; Chellappa, S.; Benner, P.: A Posteriori Error Estimation for Model Order Reduction of Parametric Systems. Advanced Modeling and Simulation in Engineering Sciences 11, 5 (2024)

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Journal Article

Frohwitter, J.; Behrendt, G.; Klamt, S.; Bettenbrock, K.: A new Zymomonas mobilis platform strain for the efficient production of chemicals. Microbial Cell Factories 23, 143 (2024)

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Journal Article

Gkimisis, L.; Richter, T.; Benner, P.: Adjacency-based, Non-Intrusive Model Reduction for Vortex-Induced Vibrations. Computers & Fluids 275, 106248 (2024)

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Journal Article

Göbel, S.; Kazemi, O.; Ma, J.; Jordan, I.; Sandig, V.; Paulissen, J.; Kerstens, W.; Thibaut, H. J.; Reichl, U.; Dallmeier, K. et al.; Genzel, Y.: Parallel Multifactorial Process Optimization and Intensification for High-Yield Production of Live YF17D-Vectored Zika Vaccine. Vaccines 12 (7), 755 (2024)

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Journal Article

Göbel, S.; Pelz, L.; Silva, C. A. T.; Brühlmann, B.; Hill, C.; Altomonte, J.; Kamen, A.; Reichl, U.; Genzel, Y.: Production of recombinant vesicular stomatitis virus-based vectors by tangential flow depth filtration. Applied Microbiology and Biotechnology 108 (1), 240 (2024)

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Journal Article

Gosea, I. V.; Gugercin, S.; Werner, S. W. R.: Structured Barycentric Forms for Interpolation-Based Data-Driven Reduced Modeling of Second-Order Systems. Advances in Computational Mathematics 50, 26 (2024)

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Goyal, P. K.; Benner, P.: Generalized Quadratic-Embeddings for Nonlinear Dynamics using Deep Learning. Physica D: Nonlinear Phenomena 463, 134158 (2024)

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Goyal, P. K.; Peherstorfer, B.; Benner, P.: Rank-Minimizing and Structured Model Inference. SIAM Journal on Scientific Computing 46 (3), pp. A1879 - A1902 (2024)

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Journal Article

Goyal, P. K.; Pontes Duff, I.; Benner, P.: Dominant Subspaces of High-Fidelity Polynomial Structured Parametric Dynamical Systems and Model Reduction. Advances in Computational Mathematics 50, 42 (2024)

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Journal Article

Grundel, S.; Sarna, N.: Hyper-Reduction for Parametrized Transport Dominated Problems via Adaptive Reduced Meshes. Partial Differential Equations and Applications 5 (1), 3 (2024)

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Grushkovska, V.; Zuyev, A.: Design of Stabilizing Feedback Controllers for High-Order Nonholonomic Systems. IEEE Control Systems Letters 8, pp. 988 - 993 (2024)

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Güner, E.; Özkan, Ö.; Yalçin-Özkat, G.; Ölgen, S.: Determination of Novel SARS-CoV-2 Inhibitors by Combination of Deep Learning, In silico Analysis and Similarity Search. Medicinal Chemistry 20 (2), pp. 153 - 231 (2024)

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Journal Article

Heyer, R.; Hellwig, P.; Maus, I.; Walke, D.; Schlüter, A.; Hassa, J.; Sczyrba, A.; Tubbesing, T.; Klocke, M.; Mächtig, T. et al.; Schallert, K.; Seick, I.; Reichl, U.; Benndorf, D.: Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenter. Water Research 250, 121020 (2024)

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Journal Article

Huber, N.; Alcalá Orozco, E. A.; Rexer, T.; Reichl, U.; Klamt, S.: Model-based optimization of cell-free enzyme cascades exemplified for the production of GDP-fucose. Metabolic Engineering 81, pp. 10 - 25 (2024)

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External

Journal Article

Hussein, F. A.; Joshi, M.; Kaur-Ghumaan, S.; Stein, M.: Hydrogen Evolving Mono‐Nuclear Manganese Complexes with Carefully Positioned Pyridine Base Ligands. ChemCatChem (2024)

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Journal Article

Kalosha, J.; Yevgenieva, Y.; Zuyev, A.: Partial Stabilization of an Orbiting Satellite Model with a Flexible Attachment. Journal of Mathematical Sciences (accepted)

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Journal Article

Kapadia, H.; Feng, L.; Benner, P.: Active-Learning-Driven Surrogate Modeling for Efficient Simulation of Parametric Nonlinear Systems. Computer Methods in Applied Mechanics and Engineering 419, 116657 (2024)

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Journal Article

Karsten, C. B.; Buettner, F. F. R.; Cajic, S.; Nehlmeier, I.; Roshani, B.; Klippert, A.; Sauermann, U.; Stolte-Leeb, N.; Reichl, U.; Gerardy-Schahn, R. et al.; Rapp, E.; Stahl-Hennig, C.; Pöhlmann, S.: Macrophage- and CD4+ T cell-derived SIV differ in glycosylation, infectivity and neutralization sensitivity. PLOS Pathogens 20 (5), e1012190 (2024)

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Journal Article

Khesali Aghtaei, H.; Heyer, R.; Reichl, U.; Benndorf, D.: Improved biological methanation using tubular foam-bed reactor. Biotechnology for Biofuels and Bioproducts 17, 66 (2024)

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Journal Article

Liljegren-Sailer, B.; Gosea, I. V.: Data-Driven and Low-Rank Implementations of Balanced Singular Perturbation Approximation. SIAM Journal on Scientific Computing 46 (1), pp. A483 - A507 (2024)

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Journal Article

Lund, K.; Palitta, D.: Low-rank-modified Galerkin Methods for the Lyapunov Equation. Electronic Transactions on Numerical Analysis 62, pp. 1 - 21 (2024)

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Journal Article

Mutavdžin, I.; Seidel-Morgenstern, A.: Estimating the parameters of competitive Langmuir adsorption isotherms from measured responses to rectangular pulse injections exploiting equilibrium theory. Adsorption 30, pp. 337 - 349 (2024)

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Journal Article

Otrin, N.; Otrin, L.; Bednarz, C.; Träger, T. K.; Hamdi, F.; Kastritis, P. L.; Ivanov, I.; Sundmacher, K.: Protein-Rich Rafts in Hybrid Polymer/Lipid Giant Unilamellar Vesicles. Biomacromolecules 25 (2), pp. 778 - 791 (2024)

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Journal Article

Pelz, L.; Dogra, T.; Marichal-Gallardo, P.; Hein, M. D.; Hemissi, G.; Kupke, S. Y.; Genzel, Y.; Reichl, U.: Production of antiviral “OP7 chimera” defective interfering particles free of infectious virus. Applied Microbiology and Biotechnology 108, 97 (2024)

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Journal Article

Peterson, L.; Bremer, J.; Sundmacher, K.: Challenges in data-based reactor modeling: A critical analysis of purely data-driven and hybrid models for a CSTR case study. Computers & Chemical Engineering 184, 108643 (2024)

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Journal Article

Philipp, F.; Schaller, M.; Worthmann, K.; Peitz, S.; Nüske, F.: Error bounds for kernel-based approximations of the Koopman operator. Applied and Computational Harmonic Analysis 71, 101657 (2024)

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Journal Article

Ponnudurai, A.; Schulze, P.; Seidel-Morgenstern, A.; Lorenz, H.: Effect of feed concentration in solvent/anti-solvent precipitation fractionation of lignin: Impact on lignins structure-property correlations. Separation and Purification Technology 337, 126343 (2024)

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Przybilla, J.; Pontes Duff, I.; Benner, P.: Model Reduction for Second-Order Systems with Inhomogeneous Initial Conditions. Systems & Control Letters 183, 105671 (2024)

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Przybilla, J.; Pontes Duff, I.; Benner, P.: Semi-Active Damping Optimization of Vibrational Systems using the Reduced Basis Method. Advances in Computational Mathematics 50 (3), 56 (2024)

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Przybilla, J.; Voigt, M.: Model Reduction of Parametric Differential-Algebraic Systems by Balanced Truncation. Mathematical and Computer Modelling of Dynamical Systems 30 (1), pp. 303 - 341 (2024)

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Raabe, J.-C.; Jameel, F.; Stein, M.; Albert, J.; Poller, M. J.: Heteroelements in polyoxometalates: a study on the influence of different group 15 elements on polyoxometalate formation. Dalton Transactions 53, pp. 454 - 466 (2024)

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