Publications of the Max Planck Institute

Journal Article (115)

2013
Journal Article
Ahamed Imam, R.; Freund, H.; Guit, P. M. R.; Fellay, C.; Meier, R. J.; Sundmacher, K.: Evaluation of Different Process Concepts for the Indirect Hydration of Cyclohexene to Cyclohexanol. Organic Process Research & Development 17 (3), pp. 343 - 358 (2013)
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Alvarado Perea, L.; Wolff, T.; Veit, P.; Hilfert, L.; Edelmann, F.T.; Hamel, C.; Seidel-Morgenstern, A.: Alumino-mesostructured Ni catalysts for the direct conversion of ethane to propene. Journal of Catalysis 305, pp. 154 - 168 (2013)
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Ashraf, A. B.; Janiga, G.; Temmel, E.; Seidel-Morgenstern, A.; Thévenin, D.: Numerical analysis of hydrodynamics and crystal motion in a batch crystallizer. Journal of Crystal Growth 372, pp. 219 - 229 (2013)
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Bajcinca, N.: Analytic solutions to optimal control problems in crystal growth processes. Journal of Process Control 23 (2), pp. 224 - 241 (2013)
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Bajcinca, N.: Time optimal cyclic crystallization. Computers and Chemical Engineering 58, pp. 381 - 389 (2013)
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Bakovic, M.P.; Selman, M.H.J.; Hoffmann, M.; Rudan, I.; Campbell, H.; Deelder, A.M.; Lauc, G.; Wuhrer, M.: High-Throughput IgG Fc N-Glycosylation Profiling by Mass Spectrometry of Glycopeptides. Journal of Proteome Research 12 (2), pp. 821 - 831 (2013)
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Balawejder, M.; Mossety-Leszczakb, B.; Poplewska, I.; Lorenz, H.; Seidel-Morgenstern, A.; Piatkowski, W.; Antos, D.: Modeling and predictions of solid–liquid equilibria for citalopram oxalate as a representative of a solid solution forming system. Fluid Phase Equilibria 346, pp. 8 - 19 (2013)
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Behne, A.; Muth, T.; Borowiak, M.; Reichl, U.; Rapp, E.: glyXalign: High-throughput migration time alignment preprocessing of electrophoretic data retrieved via multiplexed capillary gel electrophoresis with laser-induced fluorescence detection-based glycoprofiling. Electrophoresis 34 (16), pp. 2311 - 2315 (2013)
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Benner, P.; Börm, S.; Mach, T.; Reimer, K.: Computing the Eigenvalues of Symmetric H2-Matrices by Slicing the Spectrum. Computing and Visualization in Science 16 (6), pp. 271 - 282 (2013)
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Benner, P.; Breiten, T.: Low Rank Methods for a Class of Generalized Lyapunov Equations and Related Issues. Numerische Mathematik 124 (3), pp. 441 - 470 (2013)
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Benner, P.; Ezzatti, P.; Mena, H.; Quintana-Ortí, E.; Remón, A.: HPC en simulación y control a gran escala. Revista Elementos 3 (3), pp. 9 - 35 (2013)
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Benner, P.; Ezzatti, P.; Mena, H.; Quintana-Ortí, E. S.; Remón, A.: Solving Matrix Equations on Multi-Core and Many-Core Architectures. Algorithms 6 (4), pp. 857 - 870 (2013)
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Benner, P.; Ezzatti, P.; Quintana-Ortí, E. S.; Remón, A.: Matrix Inversion on CPU-GPU Platforms with Applications in Control Theory. Concurrency and Computation: Practice and Experience 25 (8), pp. 1170 - 1182 (2013)
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Benner, P.; Kürschner, P.; Saak, J.: Efficient Handling of Complex Shift Parameters in the Low-Rank Cholesky Factor ADI method. Numerical Algorithms 62 (2), pp. 225 - 251 (2013)
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Benner, P.; Kürschner, P.; Saak, J.: An Improved Numerical Method for Balanced Truncation for Symmetric Second-Order Systems. Mathematical and Computer Modelling of Dynamical Systems 19 (6), pp. 593 - 615 (2013)
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Benner, P.; Mach, T.: The Preconditioned Inverse Iteration for Hierarchical Matrices. Numerical Linear Algebra with Applications 20 (1), pp. 150 - 166 (2013)
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Benner, P.; Mach, T.: The LR Cholesky Algorithm for Symmetric Hierarchical Matrices. Linear Algebra and its Applications 439 (4), pp. 1150 - 1166 (2013)
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Benner, P.; Mena, H.: Rosenbrock Methods for Solving Riccati Differential Equations. IEEE Transactions on Automatic Control 58 (11), pp. 2950 - 2956 (2013)
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Benner, P.; Saak, J.: Numerical Solution of Large and Sparse Continuous Time Algebraic Matrix Riccati and Lyapunov Equations: A State of the Art Survey. GAMM Mitteilungen 36 (1), pp. 32 - 52 (2013)
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Benner, P.; Saak, J.; Stoll, M.; Weichelt, H. K.: Efficient Solution of Large-Scale Saddle Point Systems Arising in Riccati-Based Boundary Feedback Stabilization of Incompressible Stokes Flow. SIAM Journal on Scientific Computing 35 (5 - Special Section: 2012 Copper Mountain Conference), pp. S150 - S170 (2013)
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Benner, P.; Tomljanović, Z.; Truhar, N.: Optimal Damping of Selected Eigenfrequencies Using Dimension Reduction. Numerical Linear Algebra with Applications 20 (1), pp. 1 - 17 (2013)
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Benner, P.; Voigt, M.: Spectral Characterization and Enforcement of Negative Imaginariness for Descriptor Systems. Linear Algebra and its Applications 439 (4), pp. 1104 - 1129 (2013)
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Bensmann, A.; Hanke-Rauschenbach, R.; Sundmacher, K.: Reactor configurations for biogas plants – a model based analysis. Chemical Engineering Science 104, pp. 413 - 426 (2013)
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Bensmann, B.; Hanke-Rauschenbach, R.; Peña Arias, I.; Sundmacher, K.: Energetic evaluation of high pressure PEM electrolyzer systems for intermediate storage of renewable energies. Electrochimica Acta 110, pp. 570 - 580 (2013)
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Borchers, S.; Freund, S.; Rath, A.; Streif, S.; Reichl, U.; Findeisen, R.: Identification of Growth Phases and Influencing Factors in Cultivations with AGE1.HN Cells Using Set-Based Methods. PLoS One 8 (8), p. e68124 (2013)
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Bornhöft, A.; Hanke-Rauschenbach, R.; Sundmacher, K.: Steady-state analysis of the Anaerobic Digestion Model No. 1 (ADM1). Nonlinear Dynamics 73 (1-2), pp. 535 - 549 (2013)
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Bunz, S.-C.; Rapp, E.; Neusüss, C.: Capillary Electrophoresis/Mass Spectrometry of APTS-Labeled Glycans for the Identification of Unknown Glycan Species in Capillary Electrophoresis/Laser-Induced Fluorescence Systems. Analytical Chemistry 85 (21), pp. 10218 - 10224 (2013)
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Carius, L.; Carius, A. B.; McIntosh, M.; Grammel, H.: Quorum sensing influences growth and photosynthetic membrane production in high-cell-density cultivations of Rhodospirillum rubrum. BMC Microbiology 13, p. 189 (2013)
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Carius, L.; Hädicke, O.; Grammel, H.: Stepwise reduction of the culture redox potential allows the analysis of microaerobic metabolism and photosynthetic membrane synthesis in Rhodospirillum rubrum. Biotechnology and Bioengineering 110 (2), pp. 573 - 585 (2013)
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Chaoiya, C.; Berenguier, D.; Keating, S. M.; Naldi, A.; van Iersel, M. P.; Rodriguez, N.; Dräger, A.; Büchel, F.; Cokelaer, T.; Kowal, B. et al.; Wicks, B.; Gonçalves, E.; Dorier, J.; Page, M.; Monteiro, P. T.; Kamp von, A.; Xenarius , I.; de Jong, H.; Hucka, M.; Klamt, S.; Thieffrey, D.; Le Novère, N.; Saez-Rodriguez, J.; Helikar, T.: SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formlisms and tools. BMC Systems Biology 7, p. 135 (2013)
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Eicke, M.; Levilain, G.; Seidel-Morgenstern, A.: Efficient Resolution of Enantiomers by Coupling Preferential Crystallization and Dissolution. Part 2: A Parametric Simulation Study to Identify Suitable Process Conditions. Crystal Growth & Design 13 (4), pp. 1638 - 1648 (2013)
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Erdem, Ö. F.; Stein, M.; Kaur-Ghumaan, S.; Reijerse, E. J.; Ott, S.; Lubitz, W.: Effect of Cyanide Ligands on the Electronic Structure of [FeFe] Hydrogenase Active-Site Model Complexes with an Azadithiolate Cofactor. Chemistry – A European Journal 19 (43), pp. 14566 - 14572 (2013)
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Feng, L.; Benner, P.; Korvink, J. G.: Subspace Recycling Accelerates the Parametric Macro‐modeling of MEMS. International Journal for Numerical Methods in Engineering 94 (1), pp. 84 - 110 (2013)
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Flassig, R.; Heise, S.; Sundmacher, K.; Klamt, S.: An effective framework for reconstructing gene regulatory networks from genetical genomics data. Bioinformatics 29 (2), pp. 246 - 254 (2013)
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Flockerzi, D.; Kaspereit, M.; Kienle, A.: Spectral properties of Bi-Langmuir isotherms. Chemical Engineering Science 104, pp. 957 - 959 (2013)
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Frensing, T.; Heldt, S.; Pflugmacher, A.; Behrendt, I.; Jordan, I.; Flockerzi, D.; Genzel, Y.; Reichl, U.: Continuous Influenza Virus Production in Cell Culture Shows a Periodic Accumulation of Defective Interfering Particles. PLoS One 8 (9), p. e72288 (2013)
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Freund, S.; Rath, A.; Barradas, O. P.; Skerhutt, S.; Scholz, S.; Niklas, J.; Sandig, V.; Rose, T.; Heinzle, E.; Noll, T. et al.; Pörtner, R.; Zeng, A. P.; Reichl, U.: Batch-to-batch variability of two human designer cell lines - AGE1.HN and AGE1.HN.AAT - carried out by different laboratories under defined culture conditions using a mathematical model. Engineering in Life Sciences 13 (6), pp. 580 - 592 (2013)
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Genzel, Y.; Behrendt, I.; Rödig, J.; Rapp, E.; Kueppers, C.; Kochanek, S.; Schiedner, G.; Reichl, U.: CAP, a new human suspension cell line for influenza virus production. Applied Microbiology and Biotechnology 97 (1), pp. 111 - 122 (2013)
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Genzel, Y.; Frensing, T.; Reichl, U.: Herstellung moderner Grippeimpfstoffe: Zellkultur statt Hühnerei. Chemie in unserer Zeit 47 (1), pp. 12 - 22 (2013)
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Gonçalves, E.; Bucher, J.; Ryll, A.; Niklas, J.; Mauch, K.; Klamt, S.; Rocha, M.; Saez-Rodriguez, J.: Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models. Molecular BioSystems 9 (7), pp. 1576 - 1583 (2013)
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González Martinez, I.; Vidaković-Koch, T.; Kuwertz, R.; Turek, T.; Kunz, U.; Sundmacher, K.: The kinetics of hydrogen chloride oxidation. Journal of the Serbian Chemical Society 78 (12), pp. 2115 - 2130 (2013)
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Gruchattka, E.; Hädicke, O.; Klamt, S.; Schuetz, V.; Kayser , O.: In silico profiling of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories. Microbial Cell Factories 12, 84 (2013)
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Hädicke, O.; Lohr, V.; Genzel, Y.; Reichl, U.; Klamt, S.: Evaluating differences of metabolic performances: Statistical methods and their application to animal cell cultivations. Biotechnology and Bioengineering 110 (10), pp. 2633 - 2642 (2013)
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Hanreich, A.; Schimpf, U.; Zakrzewski, M.; Schlüter, A.; Benndorf, D.; Heyer, R.; Rapp, E.; Puhler, A.; Reichl, U.; Klocke, M.: Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation. Systematic and Applied Microbiology 36 (5), pp. 330 - 338 (2013)
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Heldt, S.; Frensing, T.; Pflugmacher, A.; Gröpler, R.; Peschel, B.; Reichl, U.: Multiscale Modeling of Influenza A Virus Infection Supports the Development of Direct-Acting Antivirals. PLoS Computational Biology 9 (11), p. e1003372 (2013)
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Hess, M. W.; Benner, P.: Fast Evaluation of Time-Harmonic Maxwell's Equations Using the Reduced Basis Method. IEEE Transactions on Microwave Theory and Techniques 61 (6), pp. 2265 - 2274 (2013)
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Heyer, R.; Kohrs, F.; Benndorf, D.; Rapp, E.; Kausmann, R.; Heiermann, M.; Klocke, M.; Reichl, U.: Metaproteome analysis of the microbial communities in agricultural biogas plants. New biotechnology 30 (6), pp. 614 - 622 (2013)
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Hlushkou, D.; Hormann, K.; Höltzel, A.; Khirevich, S.; Seidel-Morgenstern, A.; Tallarek, U.: Comparison of first and second generation analytical silica monoliths by pore-scale simulations of eddy dispersion in the bulk region. Journal of Chromatography A 1303, pp. 28 - 38 (2013)
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Hofmann, S.; Raisch, J.: Solutions to inversion problems in preferential crystallization of enantiomers—part II: Batch crystallization in two coupled vessels. Chemical Engineering Science 88, pp. 48 - 68 (2013)
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Holstein, K.; Flockerzi, D.; Conradi, C.: Multistationarity in Sequential Distributed Multisite Phosphorylation Networks. Bulletin of mathematical biology 75 (11), pp. 2028 - 2058 (2013)
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