Publications ARB group
Journal Article (121)
2021
Journal Article
323, 124573 (2021)
Blending industrial blast furnace gas with H 2 enables Acetobacterium woodii to efficiently co-utilize CO, CO2 and H2. Bioresource Technology 2020
Journal Article
21, 19 (2020)
Automatic construction of metabolic models with enzyme constraints. BMC Bioinformatics
Journal Article
20 (12), pp. 550 - 561 (2020)
Immobilization of an amino acid racemase for application in crystallization‐based chiral resolutions of asparagine monohydrate. Engineering in Life Sciences
Journal Article
9 (3), pp. 556 - 566 (2020)
MEMO: A Method for Computing Metabolic Modules for Cell-Free Production Systems. ACS Synthetic Biology
Journal Article
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. BMC Bioinformatics (21), 510 (2020)
Journal Article
38, pp. 272 - 276 (2020)
MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology
Journal Article
322 (10), pp. 54 - 65 (2020)
Synthesis of lipid-linked oligosaccharides by a compartmentalized multi-enzyme cascade for the in vitro N-glycosylation of peptides. Journal of Biotechnology
Journal Article
16 (7), e1008110 (2020)
An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets. PLoS Computational Biology
Journal Article
11, 233 (2020)
The Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12. Frontiers in Microbiology
Journal Article
ATPase-based implementation of enforced ATP wasting in Saccharomyces cerevisiae for improved ethanol production. Biotechnology for Biofuels (13), 185 (2020)
2019
Journal Article
14 (9), 1800438 (2019)
Broadening the Scope of Enforced ATP Wasting as a Tool for Metabolic Engineering in Escherichia coli. Biotechnology Journal
Journal Article
10, 2533 (2019)
Improvement of Acetaldehyde Production in Zymomonas mobilis by Engineering of Its Aerobic Metabolism. Frontiers in Microbiology
Journal Article
25 (2), pp. 156 - 158 (2019)
Computergestütztes Design mikrobieller Zellfabriken. Biospektrum
Journal Article
15 (2), e1006759 (2019)
RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion. PLoS Computational Biology
Journal Article
35 (17), pp. 3063 - 3072 (2019)
Characterizing and Ranking Computed Metabolic Engineering Strategies. Bioinformatics
Journal Article
16 (3), pp. 925 - 935 (2019)
Designing optimal experiments to discriminate interaction graph models. IEEE ACM Transactions on Computational Biology and Bioinformatics
Journal Article
10, 1095 (2019)
Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity. Frontiers in Microbiology
Journal Article
286 (22), pp. 4494 - 4508 (2019)
New light on ancient enzymes – in vitro CO2 Fixation by Pyruvate Synthase of Desulfovibrio africanus and Sulfolobus acidocaldarius. The FEBS Journal
Journal Article
19 (10), pp. 711 - 720 (2019)
Evaluation of pyruvate decarboxylase‐negative Saccharomyces cerevisiae strains for the production of succinic acid. Engineering in Life Sciences 2018
Journal Article
78 (3), pp. 1350 - 1377 (2018)
Generalizing diffuse interface methods on graphs: non-smooth potentials and hypergraphs. SIAM Journal on Applied Mathematics
Journal Article
14 (9), e1006492 (2018)
OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli. PLoS Computational Biology
Journal Article
115 (1), pp. 156 - 164 (2018)
Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnology and Bioengineering
Journal Article
13 (2), 1700539 (2018)
When do two-stage processes outperform one-stage processes? Biotechnology Journal
Journal Article
47, pp. 153 - 169 (2018)
A mathematical framework for yield (versus rate) optimization in constraint-based modeling and applications in metabolic engineering. Metabolic Engineering
Journal Article
17, 132 (2018)
Type and capacity of glucose transport influences succinate yield in two-stage cultivations. Microbial Cell Factories
Journal Article
69 (5), pp. 773 - 786 (2018)
Cand1-Mediated Adaptive Exchange Mechanism Enables Variation in F-Box Protein Expression. Molecular Cell
Journal Article
283, pp. 120 - 129 (2018)
Establishment of a five-enzyme cell-free cascade for the synthesis of uridine diphosphate N-acetylglucosamine. Journal of Biotechnology
Journal Article
13 (4), 20194699 (2018)
All three quinone species play distinct roles in ensuring optimal growth under aerobic and fermentative conditions in E. coli K 12. PLoS One
Journal Article
9, 5332 (2018)
MoVE identifies metabolic valves to switch between phenotypic states. Nature Communications 2017
Journal Article
7, 39647 (2017)
EColiCore2: a reference model of the central metabolism of Escherichia coli and the relationships to its genome-scale parent model. Scientific Reports
Journal Article
8, 15926 (2017)
Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms. Nature Communications
Journal Article
261, pp. 221 - 228 (2017)
Use of CellNetAnalyzer in biotechnology and metabolic engineering. Journal of Biotechnology
Journal Article
13 (4), e1005409 (2017)
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Computational Biology
Journal Article
13, e1005276 (2017)
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology
Journal Article
162, pp. 2015 - 232 (2017)
Analysis of network motifs in cellular regulation: Structural similarities, input–output relations and signal integration. Biosystems
Journal Article
13 (11), e1005869 (2017)
Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire. PLoS Computational Biology
Journal Article
112 (9), pp. 1984 - 1996 (2017)
Bistability and Nonmonotonic Induction of the lac Operon in the Natural Lactose Uptake System. Biophysical Journal 2016
Journal Article
5 (1), pp. 106 - 117 (2016)
Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. MicrobiologyOpen
Journal Article
32 (5), pp. 730 - 737 (2016)
Exact quantification of cellular robustness in genome-scale metabolic networks. Bioinformatics
Journal Article
38, pp. 29 - 37 (2016)
Model-Based metabolic engineering enables high yield itaconic acid production by Escherichia coli. Metabolic Engineering
Journal Article
9, 17 (2016)
Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process. Biotechnology for Biofuels
Journal Article
Challenges in horizontal model integration. BMC Systems Biology (10), 28 (2016)
Journal Article
16 (1), pp. 69 - 97 (2016)
Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry. Foundations of Computational Mathematics
Journal Article
17 (17), 252 (2016)
TRaCE+: Ensemble inference of gene regulatory networks from transcriptional expression profiles of gene knock-out experiments. BMC Bioinformatics
Journal Article
11 (4), pp. 453 - 463 (2016)
Racemization of undesired enantiomers: Immobilization of mandelate racemase and application in a fixed bed reactor. Biotechnology Journal
Journal Article
2, 16032 (2016)
MUFINS: multi-formalism interaction network simulator. npj Systems Biology and Applications 2015
Journal Article
33 (4), pp. 336 - 339 (2015)
Silence on the relevant literature and errors in implementation. Nature Biotechnology
Journal Article
77 (1), pp. 126 - 155 (2015)
A Global Convergence Result for Processive Multisite Phosphorylation Systems. Bulletin of mathematical biology
Journal Article
11 (4), e1004192 (2015)
Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling. PLoS Computational Biology
Journal Article
9, 48 (2015)
An algorithm for the reduction of genome-scale metabolic network models to meaningful core models. BMC Systems Biology