Publications ARB group
All years
All genres
Journal Article (98)
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2018
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115 (1), pp. 156 - 164 (2018)Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnology and Bioengineering
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13 (2), 1700539 (2018)When do two-stage processes outperform one-stage processes? Biotechnology Journal
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47, pp. 153 - 169 (2018)A mathematical framework for yield (versus rate) optimization in constraint-based modeling and applications in metabolic engineering. Metabolic Engineering
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69 (5), pp. 773 - 786 (2018)Cand1-Mediated Adaptive Exchange Mechanism Enables Variation in F-Box Protein Expression. Molecular Cell
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20177, 39647 (2017)EColiCore2: a reference model of the central metabolism of Escherichia coli and the relationships to its genome-scale parent model. Scientific Reports
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261, pp. 221 - 228 (2017)Use of CellNetAnalyzer in biotechnology and metabolic engineering. Journal of Biotechnology
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8, 15926 (2017)Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms. Nature Communications
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13 (4), e1005409 (2017)From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Computational Biology
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13, e1005276 (2017)Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology
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162, pp. 2015 - 232 (2017)Analysis of network motifs in cellular regulation: Structural similarities, input–output relations and signal integration. Biosystems
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13 (11), e1005869 (2017)Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire. PLoS Computational Biology
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112 (9), pp. 1984 - 1996 (2017)Bistability and Nonmonotonic Induction of the lac Operon in the Natural Lactose Uptake System. Biophysical Journal
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20165 (1), pp. 106 - 117 (2016)Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. MicrobiologyOpen
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32 (5), pp. 730 - 737 (2016)Exact quantification of cellular robustness in genome-scale metabolic networks. Bioinformatics
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38, pp. 29 - 37 (2016)Model-Based metabolic engineering enables high yield itaconic acid production by Escherichia coli. Metabolic Engineering
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9, 17 (2016)Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process. Biotechnology for Biofuels
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16 (1), pp. 69 - 97 (2016)Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry. Foundations of Computational Mathematics
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17 (17), 252 (2016)TRaCE+: Ensemble inference of gene regulatory networks from transcriptional expression profiles of gene knock-out experiments. BMC Bioinformatics
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11 (4), pp. 453 - 463 (2016)Racemization of undesired enantiomers: Immobilization of mandelate racemase and application in a fixed bed reactor. Biotechnology Journal
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2, 16032 (2016)MUFINS: multi-formalism interaction network simulator. npj Systems Biology and Applications
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201533 (4), pp. 336 - 339 (2015)Silence on the relevant literature and errors in implementation. Nature Biotechnology
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77 (1), pp. 126 - 155 (2015)A Global Convergence Result for Processive Multisite Phosphorylation Systems. Bulletin of mathematical biology
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11 (4), e1004192 (2015)Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling. PLoS Computational Biology
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9, 48 (2015)An algorithm for the reduction of genome-scale metabolic network models to meaningful core models. BMC Systems Biology
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112 (10), pp. 2195 - 2199 (2015)Enforced ATP futile cycling increases specific productivity and yield of anaerobic lactate production in Escherichia coli. Biotechnology and Bioengineering
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43 (6), pp. 1140 - 1145 (2015)Manipulation of the ATP pool as a tool for metabolic engineering. Biochemical Society Transactions (London)
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30, pp. 166 - 178 (2015)On the feasibility of growth-coupled product synthesis in microbial strains. Metabolic Engineering
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31 (17), pp. 2844 - 2851 (2015)Genome-scale strain designs based on regulatory minimal cut sets. Bioinformatics
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4 (6), pp. 350 - 361 (2015)Network-Based Analysis of Nutraceuticals in Human Hepatocellular Carcinomas Reveals Mechanisms of Chemopreventive Action. CPT: Pharmacometrics & Systems Pharmacology
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11, 795 (2015)T160‐phosphorylated CDK2 defines threshold for HGF‐dependent proliferation in primary hepatocytes. Molecular Systems Biology
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380, pp. 74 - 82 (2015)Analysis of Substrate Competition in Regulatory Network Motifs: Stimulus-Response Curves, Thresholds and Ultrasensitivity. Journal of Theoretical Biology
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16 (1), 345 (2015)Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies. BMC Bioinformatics
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21 (1), pp. 46 - 48 (2015)Computational Systems Biology — neues Fach in den Lebenswissenschaften. Biospektrum
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2014111 (4), pp. 734 - 747 (2014)Model-based derivation, analysis and control of unstable microaerobic steady-states-Considering Rhodospirillum rubrum as an example. Biotechnology and Bioengineering
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6 (11), 95, pp. 1742 - 5662 (2014)Catalytic constants enable the emergence of bistability in dual phosphorylation. Interface: Journal of the Royal Society
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5, 124, p. 124 (2014)A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen. Frontiers in Microbiology
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13, p. 128 - 128 (2014)Cyanobacterial biofuels: new insights and strain design strategies revealed by computational modeling. Microbial Cell Factories
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76 (8), pp. 1892 - 1916 (2014)N-site Phosphorylation Systems with 2N-1 Steady States. Bulletin of Mathematical Biology
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9 (9), p. e107640 (2014)Basic Regulatory Principles of Escherichia coli's Electron Transport Chain for Varying Oxygen Conditions. PLoS One
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10 (1), e1003378 (2014)Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks. PLoS Computational Biology
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14, p. 72 (2014)The avian cell line AGE1.CR.pIX characterized by metabolic flux analysis. BMC Biotechnology
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80 (2), pp. 367 - 381 (2014)The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond. The Plant Journal
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124, pp. 26 - 38 (2014)A model integration approach linking signalling and gene-regulatory logic with kinetic metabolic models. Biosystems
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9 (1), p. e87307 (2014)Analysis of Escherichia coli Mutants with a Linear Respiratory Chain. PLoS One
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10 (5), p. e1003614 (2014)Reciprocal Regulation as a Source of Ultrasensitivity in Two-Component Systems with a Bifunctional Sensor Kinase. PLoS Computational Biology
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4 (69), pp. 36471 - 36479 (2014)Combined electrochemical and microscopic study of porous enzymatic electrodes with direct electron transfer mechanism. RSC Advances
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2013110 (2), pp. 573 - 585 (2013)Stepwise reduction of the culture redox potential allows the analysis of microaerobic metabolism and photosynthetic membrane synthesis in Rhodospirillum rubrum. Biotechnology and Bioengineering