Publications MSD group

External

Journal Article

Elmaci, D. N.; Hopping, G.; Hoffmann, W.; Muttenthaler, M.; Stein, M.: The structural integrity of human TFF1 under reducing conditions. Redox Biology 81, 103534 (2025)

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Journal Article

Gerlach, M.; Huxoll, F.; Jameel, F.; Stein, M.; Seidel-Morgenstern, A.; Hamel, C.; Sadowski, G.: Activity-based approach to predict the effect of solvent composition on the reaction kinetics of hydroformylation. Chemical Engineering Journal 513, 162959 (2025)

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Journal Article

Ilter, M.; Escorcia Cabrera, A.; Schulze-Niemand, E.; Naumann, M.; Stein, M.: Activation and Reactivity of the Deubiquitinylase OTU Cezanne-2 from MD Simulations and QM/MM Calculations. Journal of Chemical Information and Modeling 65 (2), pp. 921 - 936 (2025)

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External

Journal Article

Kumar, R.; Escorcia Cabrera, A. M.; Stein, M.: Fully Oxidized State of the Oxygen-Tolerant [NiFe] Hydrogenase fromHydrogenophilus thermoluteolusSH: A Quantum Mechanics Cluster and Quantum Mechanics/Molecular Mechanics Study. Inorganic Chemistry 64 (19), pp. 9558 - 9570 (2025)

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Journal Article

Kweyu, C. M.; Khoromskaia, V.; Khoromskij, B.; Stein, M.; Benner, P.: Solution Decomposition for the Nonlinear Poisson-Boltzmann Equation using the Range-Separated Tensor Format. SIAM Journal on Scientific Computing 47 (1), pp. B87 - B107 (2025)

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Journal Article

Otta, J.; Mikuláštík, J.; Šípka, R.; Stein, M.; Kühne, I. A.; Vrňata, M.; Vlček, J.: Fullerene-Doped Poly(ionic liquids) as Small Molecular Gas Sensors─Control of Intermolecular Interactions. ACS Omega 10 (1), pp. 1364 - 1372 (2025)

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2024

Journal Article

Agarwal, T.; Joshi, M.; Ritu; Stein, M.; Kaur-Ghumaan, S.: Design of Rigidified μ-(9-Fluorenethiolate) {FeFe} Hydrogen Evolving Catalysts. Organometallics 43 (24), pp. 3096 - 3105 (2024)

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Journal Article

Coux, O.; Farràs, R.; Abbas, M.; Barrio, R.; Blattner, C.; Brix, K.; Chachami, G.; Chevet, E.; Clague, M. J.; Dantuma, N. et al.; Rankov, A. D.; Galdeano, C.; Giglione, C.; Glickman, M. H.; Lalmanach, G.; Lindon, C.; Matthiesen, R.; Meroni, G.; Pick, E.; Poidevin, L.; Rivas, C.; Rodriguez, M. S.; Sammler, E.; Shiber, A.; Skoulakis, E. M.C.; Stein, M.; Vertegaal, A. C.O.: ProteoCure: A European network to fine-tune the proteome. Biochimie 226, pp. 4 - 9 (2024)

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Journal Article

Güner, E.; Özkan, Ö.; Yalçin-Özkat, G.; Ölgen, S.: Determination of Novel SARS-CoV-2 Inhibitors by Combination of Deep Learning, In silico Analysis and Similarity Search. Medicinal Chemistry 20 (2), pp. 153 - 231 (2024)

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Journal Article

Hussein, F. A.; Joshi, M.; Kaur-Ghumaan, S.; Stein, M.: Hydrogen Evolving Mono‐Nuclear Manganese Complexes with Carefully Positioned Pyridine Base Ligands. ChemCatChem 16 (18), e202400450 (2024)

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Journal Article

Jameel, F.; Stein, M.: Chemical accuracy for ligand-receptor binding Gibbs energies through multi-level SQM/QM calculations. Physical Chemistry Chemical Physics 26, pp. 21197 - 21203 (2024)

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External

Journal Article

Özkiliç, Y.; Stein, M.: Modelling the elusive conformational activation in kynurenine 3-monooxygenase. Organic & Biomolecular Chemistry 22, pp. 6550 - 6560 (2024)

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Journal Article

Raabe, J.-C.; Jameel, F.; Stein, M.; Albert, J.; Poller, M. J.: Heteroelements in polyoxometalates: a study on the influence of different group 15 elements on polyoxometalate formation. Dalton Transactions 53, pp. 454 - 466 (2024)

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Journal Article

Tenberg, V.; Sadeghi, M.; Schultheis, A.; Joshi, M.; Stein, M.; Lorenz, H.: Aqueous solution and solid-state behaviour ofl-homophenylalanine: experiment, modelling, and DFT calculations. RSC Advances 14, pp. 10580 - 10589 (2024)

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2023

Journal Article

Barrera, J.; H. Haeri, H.; Heinrich, J.; Stein, M.; Hinderberger, D.; Kulak, N.: Impact of N-heteroaromatic N-termini in Cu(ii) ATCUN metallopeptides on their biorelevant redox activity. Dalton Transactions 52 (11), pp. 3279 - 3286 (2023)

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Journal Article

Creutznacher, R.; Schulze-Niemand, E.; König, P.; Stanojlovic, V.; Mallagaray, A.; Peters, T.; Stein, M.; Schubert, M.: Conformational Control of Fast Asparagine Deamidation in a Norovirus Capsid Protein. Biochemistry 62 (5), pp. 1032 - 1043 (2023)

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Journal Article

Gavutis, M.; Schulze-Niemand, E.; Lee, H.-H.; Liedberg, B.; Stein, M.; Valiokas, R.: Bilayer lipid membrane formation on surface assemblies with sparsely distributed tethers. Nanoscale 15, pp. 9759 - 9774 (2023)

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Journal Article

Gerlach, M.; Jameel, F.; Seidel-Morgenstern, A.; Stein, M.; Hamel, C.: Operando characterization of rhodium catalyst degradation in hydroformylation. Catalysis Science & Technology 13 (6), pp. 1788 - 1801 (2023)

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Journal Article

Ilter, M.; Schulze-Niemand, E.; Naumann, M.; Stein, M.: Structural Dynamics of Lys11-Selective Deubiquitinylase Cezanne-1 during the Catalytic Cycle. Journal of Chemical Information and Modeling 63 (7), pp. 2084 - 2094 (2023)

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Journal Article

Kaim, V.; Joshi, M.; Stein, M.; Kaur-Ghumaan, S.: Mono-nuclear ruthenium catalyst for hydrogen evolution. International Journal of Hydrogen Energy 48 (79), pp. 30718 - 30731 (2023)

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Journal Article

Karacelik, A. A.; Yalçin-Özkat, G.: Mentha longifolia ssp. longifolia Essential Oil Components as Novel Carbonic Anhydrase Isoform i and IX Inhibitors: Biological and Molecular Docking Studies. Letters in Drug Design and Discovery 20 (6), pp. 767 - 778 (2023)

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Journal Article

Kumar, R.; Stein, M.: The Fully Oxidized State of the Glutamate Coordinated O2-Tolerant [NiFe]-Hydrogenase Shows a Ni(III)/Fe(III) Open-Shell Singlet Ground State. Journal of the American Chemical Society 145, pp. 10954 - 10959 (2023)

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Journal Article

Kweyu, C. M.; Feng, L.; Stein, M.; Benner, P.: Reduced Basis Method for the Nonlinear Poisson-Boltzmann Equation regularized by the Range-Separated Canonical Tensor Format. International Journal of Nonlinear Sciences and Numerical Simulation 24 (8), pp. 2915 - 2935 (2023)

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Journal Article

Raabe, J.-C.; Esser, T.; Jameel, F.; Stein, M.; Albert, J.; Poller, M. J.: Study on the incorporation of various elements into the Keggin lacunary-type phosphomolybdate [PMo9O34]9−and subsequent purification of the polyoxometalates by nanofiltration. Inorganic Chemistry Frontiers 10 (16), pp. 4854 - 4868 (2023)

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Journal Article

Tenberg, V.; Stein, M.; Lorenz, H.: Solid Phase and Stability Investigation of a Co-Crystal in the l-Valine/l-Leucine System. Crystals 13 (11), 1542 (2023)

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Journal Article

Yalçin-Özkat, G.; Ersan, R. H.; Ulger, M.; Ulger, S. T.; Burmaoglu, S.; Yildiz, I.; Algul, O.: Design, synthesis, and computational studies of benzimidazole derivatives as new antitubercular agents. Journal of Biomolecular Structure and Dynamics 41 (7), pp. 2667 - 2686 (2023)

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2022

Journal Article

Burmaoglu, S.; Kazancioglu, E. A.; Kazancioglu, M. Z.; Sağlamtaş, R.; Yalçin-Özkat, G.; Gulcin, I.; Algul, O.: Synthesis, molecular docking and some metabolic enzyme inhibition properties of biphenyl-substituted chalcone derivatives. Journal of Molecular Structure 1254, 132358 (2022)

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Journal Article

Díaz Mirón, J.E.Z.; Stein, M.: A benchmark for non-covalent interactions in organometallic crystals. Physical Chemistry Chemical Physics 24, pp. 29338 - 29349 (2022)

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Journal Article

Jameel, F.; Stein, M.: The many roles of solvent in homogeneous catalysis - The reductive amination showcase. Journal of Catalysis 405, pp. 24 - 34 (2022)

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Journal Article

Kaim, V.; Joshi, M.; Stein, M.; Kaur-Ghumaan, S.: Mononuclear manganese complexes as hydrogen evolving catalysts. Frontiers in Chemistry 10, 993085 (2022)

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Journal Article

Natarajan, M.; Kumar, N.; Joshi, M.; Stein, M.; Kaur‐Ghumaan, S.: Mechanism of Diiron Hydrogenase Complexes Controlled by Nature of Bridging Dithiolate Ligand. ChemistryOpen 11 (1), e202100238 (2022)

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Journal Article

Schlüter, D.; Schulze-Niemand, E.; Stein, M.; Naumann, M.: Ovarian tumor domain proteases in pathogen infection. Trends in Microbiology 30 (1), pp. 22 - 33 (2022)

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Journal Article

Schulze-Niemand, E.; Naumann, M.; Stein, M.: Substrate‐assisted activation and selectivity of the bacterial RavD effector deubiquitinylase. Proteins: Structure, Function, and Bioinformatics 90 (4), pp. 947 - 958 (2022)

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Journal Article

Yalçin-Özkat, G.: Computational studies with flavonoids and terpenoids as BRPF1 inhibitors: in silico biological activity prediction, molecular docking, molecular dynamics simulations, MM/PBSA calculations. SAR and QSAR in Environmental Research 33 (7), pp. 533 - 550 (2022)

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2021

Journal Article

Benner, P.; Khoromskaia, V.; Khoromskij, B.; Kweyu, C. M.; Stein, M.: Regularization of Poisson-Boltzmann Type Equations with Singular Source Terms Using the Range-Separated Tensor Format. SIAM Journal on Scientific Computing 43 (1), pp. A415 - A445 (2021)

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Journal Article

Boz, E.; Stein, M.: Accurate Receptor-Ligand Binding Free Energies from Fast QM Conformational Chemical Space Sampling. International Journal of Molecular Sciences 22 (6), 3078 (2021)

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Journal Article

Heinrich, J.; Bossad-Ahmad, K.; Riisom, M.; Haeri, H. H.; Steel, T. R.; Hergl, V.; Langhans, A.; Schattschneider, C.; Barrera, J.; Jamieson, S. M. F. et al.; Stein, M.; Hinderberger, D.; Hartinger, C. G.; Bal, W.; Kulak, N.: Incorporation of β‐alanine in Cu(II) ATCUN peptide complexes increases ROS levels, DNA cleavage and antiproliferative activity. Chemistry – A European Journal 27 (72), pp. 18093 - 18102 (2021)

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Journal Article

Huxoll, F.; Jameel, F.; Bianga, J.; Seidensticker, T.; Stein, M.; Sadowski, G.; Vogt, D.: Solvent Selection in Homogeneous Catalysis—Optimization of Kinetics and Reaction Performance. ACS Catalysis 11, pp. 590 - 594 (2021)

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Journal Article

Jameel, F.; Stein, M.: Solvent effects in hydroformylation of long-chain olefins. Molecular Catalysis 503, 111429 (2021)

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Journal Article

Kirschtowski, S.; Jameel, F.; Stein, M.; Seidel-Morgenstern, A.; Hamel, C.: Kinetics of the Reductive Amination of 1-Undecanal in Thermomorphic Multicomponent System. Chemical Engineering Science 230, 116187 (2021)

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Journal Article

Kühne, I. A.; Gavin, L. C.; Harris, M.; Gildea, B.; Müller-Bunz, H.; Stein, M.; Morgan, G. G.: Mn(III) complexes with nitro-substitutedligands—Spin states with a twist. Journal of Applied Physics 129, 213903 (2021)

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Journal Article

Pandey, I. K.; Agarwal, T.; Mobin, S. M.; Stein, M.; Kaur-Ghumaan, S.: Switching Site Reactivity in Hydrogenase Model Systems by Introducing a Pendant Amine Ligand. ACS Omega 6, pp. 4192 - 4203 (2021)

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Journal Article

Schulze-Niemand, E.; Naumann, M.; Stein, M.: The Activation and Selectivity of the Legionella RavD Deubiquitinase. Frontiers in Molecular Biosciences 8, 770320 (2021)

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Journal Article

Sivakumar, D.; Stein, M.: Binding of SARS-CoV Covalent Non-Covalent Inhibitors to the SARS-CoV-2 Papain-Like Protease and Ovarian Tumor Domain Deubiquitinases. Biomolecules 11, 802 (2021)

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Journal Article

Yalçin-Özkat, G.: Molecular Modeling Strategies of Cancer Multidrug Resistance. Drug Resistance Updates 59, 100789 (2021)

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2020

Journal Article

Creutznacher, R.; Schulze, E.; Wallmann, G.; Peters, T.; Stein, M.; Mallagaray, A.: Chemical-Shift Perturbations Reflect Bile Acid Binding to Norovirus Coat Protein - Recognition Comes in Different Flavors. ChemBioChem: A European Journal of Chemical Biology 21 (7), pp. 1007 - 1021 (2020)

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Journal Article

Kühne, I. A.; Barker, A.; Zhang, F.; Stamenov, P.; O’Doherty, O.; Müller-Bunz, H.; Stein, M.; Rodriguez, B. J.; Morgan, G. G.: Modulation of Jahn-Teller Distortion and Electromechanical Response in a Mn3+ Spin Crossover Complex. Journal of Physics: Condensed Matter 32 (40), 404002 (2020)

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Journal Article

Kweyu, C. M.; Feng, L.; Stein, M.; Benner, P.: Fast Solution of the Linearized Poisson-Boltzmann Equation with nonaffine Parametrized Boundary Conditions Using the Reduced Basis Method. Computing and Visualization in Science 23 (1-4), 15, 19 pages (2020)

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Journal Article

Sivakumar, D.; Kumar, V.; Naumann, M.; Stein, M.: Activation and selectivity of OTUB-1 and OTUB-2 deubiquitinylases. Journal of Biological Chemistry 295 (20), pp. 6972 - 6982 (2020)

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