Publications MSD group

Journal Article

Creutznacher, R.; Schulze-Niemand, E.; König, P.; Stanojlovic, V.; Mallagaray, A.; Peters, T.; Stein, M.; Schubert, M.: Conformational Control of Fast Asparagine Deamidation in a Norovirus Capsid Protein. Biochemistry 62 (5), pp. 1032 - 1043 (2023)

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Journal Article

Gerlach, M.; Jameel, F.; Seidel-Morgenstern, A.; Stein, M.; Hamel, C.: Operando characterization of rhodium catalyst degradation in hydroformylation. Catalysis Science & Technology 13 (6), pp. 1788 - 1801 (2023)

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Journal Article

Ilter, M.; Schulze-Niemand, E.; Naumann, M.; Stein, M.: Structural Dynamics of Lys11-Selective Deubiquitinylase Cezanne-1 during the Catalytic Cycle. Journal of Chemical Information and Modeling 63 (7), pp. 2084 - 2094 (2023)

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2022

Journal Article

Burmaoglu, S.; Kazancioglu, E. A.; Kazancioglu, M. Z.; Sağlamtaş, R.; Yalcin-Özkat, G.; Gulcin, I.; Algul, O.: Synthesis, molecular docking and some metabolic enzyme inhibition properties of biphenyl-substituted chalcone derivatives. Journal of Molecular Structure 1254, 132358 (2022)

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Journal Article

Díaz Mirón, J.E.Z.; Stein, M.: A benchmark for non-covalent interactions in organometallic crystals. Physical Chemistry Chemical Physics 24, pp. 29338 - 29349 (2022)

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Journal Article

Jameel, F.; Stein, M.: The many roles of solvent in homogeneous catalysis - The reductive amination showcase. Journal of Catalysis 405, pp. 24 - 34 (2022)

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Journal Article

Kaim, V.; Joshi, M.; Stein, M.; Kaur-Ghumaan, S.: Mononuclear manganese complexes as hydrogen evolving catalysts. Frontiers in Chemistry 10, 993085 (2022)

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Journal Article

Kweyu, C. M.; Feng, L.; Stein, M.; Benner, P.: Reduced Basis Method for the Nonlinear Poisson-Boltzmann Equation regularized by the Range-Separated Canonical Tensor Format. International Journal of Nonlinear Sciences and Numerical Simulation (2022)

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pre-print

Journal Article

Natarajan, M.; Kumar, N.; Joshi, M.; Stein, M.; Kaur‐Ghumaan, S.: Mechanism of Diiron Hydrogenase Complexes Controlled by Nature of Bridging Dithiolate Ligand. ChemistryOpen 11 (1), e202100238 (2022)

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Journal Article

Schlüter, D.; Schulze-Niemand, E.; Stein, M.; Naumann, M.: Ovarian tumor domain proteases in pathogen infection. Trends in Microbiology 30 (1), pp. 22 - 33 (2022)

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Journal Article

Schulze-Niemand, E.; Naumann, M.; Stein, M.: Substrate‐assisted activation and selectivity of the bacterial RavD effector deubiquitinylase. Proteins: Structure, Function, and Bioinformatics 90 (4), pp. 947 - 958 (2022)

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Journal Article

Yalcin-Özkat, G.: Computational studies with flavonoids and terpenoids as BRPF1 inhibitors: in silico biological activity prediction, molecular docking, molecular dynamics simulations, MM/PBSA calculations. SAR and QSAR in Environmental Research 33 (7), pp. 533 - 550 (2022)

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Journal Article

Yalcin-Özkat, G.; Ersan, R. H.; Ulger, M.; Ulger, S. T.; Burmaoglu, S.; Yildiz, I.; Algul, O.: Design, synthesis, and computational studies of benzimidazole derivatives as new antitubercular agents. Journal of Biomolecular Structure and Dynamics, pp. 1 - 20 (2022)

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2021

Journal Article

Benner, P.; Khoromskaia, V.; Khoromskij, B.; Kweyu, C. M.; Stein, M.: Regularization of Poisson-Boltzmann Type Equations with Singular Source Terms Using the Range-Separated Tensor Format. SIAM Journal on Scientific Computing 43 (1), pp. A415 - A445 (2021)

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pre-print

Journal Article

Boz, E.; Stein, M.: Accurate Receptor-Ligand Binding Free Energies from Fast QM Conformational Chemical Space Sampling. International Journal of Molecular Sciences 22 (6), 3078 (2021)

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Journal Article

Heinrich, J.; Bossad-Ahmad, K.; Riisom, M.; Haeri, H. H.; Steel, T. R.; Hergl, V.; Langhans, A.; Schattschneider, C.; Barrera, J.; Jamieson, S. M. F. et al.; Stein, M.; Hinderberger, D.; Hartinger, C. G.; Bal, W.; Kulak, N.: Incorporation of β‐alanine in Cu(II) ATCUN peptide complexes increases ROS levels, DNA cleavage and antiproliferative activity. Chemistry – A European Journal 27 (72), pp. 18093 - 18102 (2021)

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Journal Article

Huxoll, F.; Jameel, F.; Bianga, J.; Seidensticker, T.; Stein, M.; Sadowski, G.; Vogt, D.: Solvent Selection in Homogeneous Catalysis—Optimization of Kinetics and Reaction Performance. ACS Catalysis 11, pp. 590 - 594 (2021)

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Journal Article

Jameel, F.; Stein, M.: Solvent effects in hydroformylation of long-chain olefins. Molecular Catalysis 503, 111429 (2021)

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Journal Article

Kirschtowski, S.; Jameel, F.; Stein, M.; Seidel-Morgenstern, A.; Hamel, C.: Kinetics of the Reductive Amination of 1-Undecanal in Thermomorphic Multicomponent System. Chemical Engineering Science 230, 116187 (2021)

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Journal Article

Kühne, I. A.; Gavin, L. C.; Harris, M.; Gildea, B.; Müller-Bunz, H.; Stein, M.; Morgan, G. G.: Mn(III) complexes with nitro-substitutedligands—Spin states with a twist. Journal of Applied Physics 129, 213903 (2021)

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Journal Article

Pandey, I. K.; Agarwal, T.; Mobin, S. M.; Stein, M.; Kaur-Ghumaan, S.: Switching Site Reactivity in Hydrogenase Model Systems by Introducing a Pendant Amine Ligand. ACS Omega 6, pp. 4192 - 4203 (2021)

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Journal Article

Schulze-Niemand, E.; Naumann, M.; Stein, M.: The Activation and Selectivity of the Legionella RavD Deubiquitinase. Frontiers in Molecular Biosciences 8, 770320 (2021)

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Journal Article

Sivakumar, D.; Stein, M.: Binding of SARS-CoV Covalent Non-Covalent Inhibitors to the SARS-CoV-2 Papain-Like Protease and Ovarian Tumor Domain Deubiquitinases. Biomolecules 11, 802 (2021)

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Journal Article

Yalcin-Özkat, G.: Molecular Modeling Strategies of Cancer Multidrug Resistance. Drug Resistance Updates 59, 100789 (2021)

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2020

Journal Article

Creutznacher, R.; Schulze, E.; Wallmann, G.; Peters, T.; Stein, M.; Mallagaray, A.: Chemical-Shift Perturbations Reflect Bile Acid Binding to Norovirus Coat Protein - Recognition Comes in Different Flavors. ChemBioChem: A European Journal of Chemical Biology 21 (7), pp. 1007 - 1021 (2020)

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Journal Article

Kühne, I. A.; Barker, A.; Zhang, F.; Stamenov, P.; O’Doherty, O.; Müller-Bunz, H.; Stein, M.; Rodriguez, B. J.; Morgan, G. G.: Modulation of Jahn-Teller Distortion and Electromechanical Response in a Mn3+ Spin Crossover Complex. Journal of Physics: Condensed Matter 32 (40), 404002 (2020)

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Journal Article

Kweyu, C. M.; Feng, L.; Stein, M.; Benner, P.: Fast Solution of the Linearized Poisson-Boltzmann Equation with nonaffine Parametrized Boundary Conditions Using the Reduced Basis Method. Computing and Visualization in Science 23 (1-4), 15, 19 pages (2020)

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pre-print

Journal Article

Sivakumar, D.; Kumar, V.; Naumann, M.; Stein, M.: Activation and selectivity of OTUB-1 and OTUB-2 deubiquitinylases. Journal of Biological Chemistry 295 (20), pp. 6972 - 6982 (2020)

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2019

Journal Article

Dreimann, J. M.; Kohls, E.; Warmeling, H. F. W.; Stein, M.; Guo, L. F.; Garland, M.; Dinh, T. N.; Vorholt, A. J.: In Situ Infrared Spectroscopy as a Tool for Monitoring Molecular Catalyst for Hydroformylation in Continuous Processes. ACS Catalysis 9, pp. 4308 - 4319 (2019)

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Journal Article

Edler, E.; Stein, M.: Recognition and stabilization of geranylgeranylated human Rab5 by the GDP Dissociation Inhibitor (GDI). Small GTPases 10 (3), pp. 227 - 242 (2019)

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Journal Article

Jameel, F.; Kohls, E.; Stein, M.: Mechanism and Control of the Palladium-Catalyzed Alkoxycarbonylation of Oleochemicals from Sustainable Sources. ChemCatChem 11 (19), pp. 4894 - 4906 (2019)

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Journal Article

Kanan, T.; Kanan, D.; Erol, I.; Yazdi, S.; Stein, M.; Durdagi, S.: Targeting the NF-κB/IκBα complex via fragment-based E-Pharmacophore virtual screening and binary QSAR models. Journal of Molecular Graphics and Modelling 86, pp. 264 - 277 (2019)

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Journal Article

Melnikov, S.; Stein, M.: Solvation and Dynamics of CO₂ in Aqueous Alkanolamine Solutions. ACS Sustainable Chemistry & Engineering 7 (1), pp. 1028 - 1037 (2019)

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Journal Article

Melnikov, S.; Stein, M.: The effect of CO2 loading on alkanolamine absorbents in aqueous solutions. Physical Chemistry Chemical Physics 21, pp. 18386 - 18392 (2019)

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Journal Article

Münzberg, E.; Stein, M.: Structure and Dynamics of Mono- vs. Doubly Lipidated Rab5 in Membranes. International Journal of Molecular Sciences 20 (19), 4773 (2019)

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Journal Article

Petrenko, A.; Stein, M.: Toward a Molecular Reorganization Energy-Based Analysis of Third- Order Nonlinear Optical Properties of Polymethine Dyes and J‑Aggregates. The Journal of Physical Chemistry A 123 (43), pp. 9321 - 9327 (2019)

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Journal Article

Pullen, S.; Maji, S.; Stein, M.; Ott, S.: Restricted rotation of an Fe(CO)₂(PL₃)-subunit in [FeFe]-hydrogenase active site mimics by intramolecular ligation. Dalton Transactions 48 (18), 5939, pp. 5933 (2019)

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Journal Article

Stein, M.; Heimsaat, M.: Intermolecular Interactions in Molecular Organic Crystals upon Relaxation of Lattice Parameters. Crystals 9 (12), 665 (2019)

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2018

Journal Article

Boz, E.; Tüzün, N. S.; Stein, M.: Computational investigation of the control of the thermodynamics and microkinetics of the reductive amination reaction by solvent coordination and a co-catalyst. RSC Advances 8, pp. 36662 - 36674 (2018)

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Journal Article

Buchholz, H. K.; Stein, M.: Accurate Lattice Energies of Organic Molecular Crystals from Periodic Turbomole Calculations. Journal of Computational Chemistry 39 (19), pp. 1335 - 1343 (2018)

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Journal Article

Escorcia Cabrera, A. M.; Stein, M.: QM/MM Investigation of the Role of a Second Coordination Shell Arginine in [NiFe]-Hydrogenases. Frontiers in Chemistry (6), 164 (2018)

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Journal Article

Kumar, V.; Naumann, M.; Stein, M.: Computational Studies on the Inhibitor Selectivity of Human JAMM Deubiquitinylases Rpn11 and CSN5. Frontiers in Chemistry 6, 480 (2018)

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Journal Article

Melnikov, S.; Stein, M.: Molecular Dynamics Study of the Solution Structure, Clustering, and Diffusion of Four Aqueous Alkanolamines. The Journal of Physical Chemistry B 122 (10), pp. 2769 - 2778 (2018)

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Journal Article

Pandey, I. K.; Natarajan, M.; Faujdar, H.; Hussain, F.; Stein, M.; Kaur-Ghumaan, S.: Intramolecular stabilization of a catalytic [FeFe]-hydrogenase mimic investigated by experiment and theory. Dalton Transactions 47, pp. 4941 - 4949 (2018)

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Journal Article

Salmas, R. E.; Is, Y. S.; Durdagi, S.; Stein, M.; Yurtsever, M.: A QM protein–ligand investigation of antipsychotic drugs with the dopamine D2 Receptor (D2R). Journal of Biomolecular Structure and Dynamics 36 (10), pp. 2668 - 2677 (2018)

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Journal Article

Salmas, R. E.; Seeman, P.; Stein, M.; Durdagi, S.: Structural Investigation of the Dopamine-2 Receptor Agonist Bromocriptine Binding to Dimeric D2HighR and D2LowR States. Journal of Chemical Information and Modeling 58 (4), pp. 826 - 836 (2018)

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Journal Article

Schulze, E.; Stein, M.: Simulation of Mixed Self-Assembled Monolayers on Gold: Effect of Terminal Alkyl Anchor Chain and Monolayer Composition. The Journal of Physical Chemistry B 122, pp. 7699 - 7710 (2018)

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2017

Journal Article

Buchholz, H. K.; Hylton, R. K.; Brandenburg, J. G.; Seidel-Morgenstern, A.; Lorenz, H.; Stein, M.; Price, S. L.: Thermochemistry of racemic and enantiopure molecular crystals for predicting enantiomer separation. Crystal Growth & Design 17 (9), pp. 4676 - 4686 (2017)

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Journal Article

Edler, E.; Schulze, E.; Stein, M.: Membrane localization and dynamics of geranylgeranylated Rab5 hypervariable region. Biochimica et Biophysica Acta (BBA) - Biomembranes 1859 (8), pp. 1335 - 1349 (2017)

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