Publications

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Journal Article (9)

  1. Journal Article
    Koch, S.; Kohrs, F.; Lahmann, P.; Bissinger, T.; Wendschuh, S.; Benndorf, D.; Reichl, U.; Klamt, S.: RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion. PLoS Computational Biology 15 (2), e1006759 (2019)
  2. Journal Article
    Muth, T.; Kohrs, F.; Heyer, R.; Benndorf, D.; Rapp, E.; Reichl, U.; Martens, L.; Renard, B. Y.: MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go. Analytical Chemistry 90, pp. 685 - 689 (2018)
  3. Journal Article
    Kohrs, F.; Heyer, R.; Bissinger, T.; Kottler, R.; Schallert, K.; Püttker, S.; Behne, A.; Rapp, E.; Benndorf, D.; Reichl, U.: Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community composition. Anaerobe 46, pp. 56 - 68 (2017)
  4. Journal Article
    Heyer, R.; Benndorf, D.; Kohrs, F.; De Vrieze, J.; Boon, N.; Hoffmann, M.; Rapp, E.; Schlüter, A.; Sczyrba, A.; Reichl, U.: Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type. Biotechnology for Biofuels 9 (9), 155 (2016)
  5. Journal Article
    Heyer, R.; Kohrs, F.; Reichl, U.; Benndorf, D.: Metaproteomics of complex microbial communities in biogas plants. Microbial Biotechnology 8 (5), pp. 749 - 763 (2015)
  6. Journal Article
    Muth, T.; Behne, A.; Heyer, R.; Kohrs, F.; Benndorf, D.; Hoffmann, M.; Lehteva, M.; Reichl, U.; Martens, L.; Rapp, E.: The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and Interpretation. Journal of Proteome Research 14 (3), pp. 1557 - 1565 (2015)
  7. Journal Article
    Theuerl, S.; Kohrs, F.; Benndorf, D.; Maus, I.; Wibberg, D.; Schlüter, A.; Kausmann, R.; Heiermann, M.; Rapp, E.; Reichl, U. et al.; Pühler, A.; Klocke, M.: Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome. Applied Microbiology and Biotechnology 99 (18), pp. 7791 - 7803 (2015)
  8. Journal Article
    Kohrs, F.; Heyer, R.; Magnussen, A.; Benndorf, D.; Muth, T.; Behne, A.; Rapp, E.; Kausmann, R.; Heiermann, M.; Klocke, M.: Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants. Anaerobe 29, pp. 59 - 67 (2014)
  9. Journal Article
    Heyer, R.; Kohrs, F.; Benndorf, D.; Rapp, E.; Kausmann, R.; Heiermann, M.; Klocke, M.; Reichl, U.: Metaproteome analysis of the microbial communities in agricultural biogas plants. New biotechnology 30 (6), pp. 614 - 622 (2013)

Talk (11)

  1. Talk
    Benndorf, D.; Kohrs, F.; Heyer, R.; Becher, B.; Rapp, E.; De Vrieze , J.; Schlüter, A.; Sczyrba, A.; Boon, N.; Reichl, U.: High-throughput metaproteomics of biogas plants. Symposium on Advances and Applications in Metaproteomics, Magdeburg, Germany (2016)
  2. Talk
    Heyer, R.; Benndorf, D.; Kohrs, F.; De Vrieze, J.; Boon, N.; Hoffmann, M.; Rapp, E.; Schlüter, A.; Sczyrba, A.; Reichl, U.: Proteotyping of biogas plant microbiomes. Annual Conference of the Association for General and Applied Microbiology (VAAM), Jena, Germany (2016)
  3. Talk
    Kohrs, F.; Heyer, R.; Benndorf, D.; Bissinger, T.; Kottler, R.; Fronk, K.; Rapp, E.; Reichl, U.: Kultivierung und Metaproteomanalyse anaerober mikrobieller Gemeinschaften. 23. SIMBA-Treffen, Havelberg, Germany (2016)
  4. Talk
    Benndorf, D.; Kohrs, F.; Heyer, R.; Rapp, E.; De Vrieze, J.; Boon, N.; Schlüter, A.; Sczyrba, A.; Reichl, U.: An optimized workflow for high-throughput metaproteomics of biogas plants. 9th International Symposium on Anaerobic Microbiology, Portorož, Slovenia (2015)
  5. Talk
    Bensmann, B.; Hanke-Rauschenbach, R.; Heyer, R.; Kohrs, F.; Benndorf, D.; Sundmacher, K.: Methanation of renewable hydrogen within biogas reactors? A process systems engineering approac. CHISA 2014, Prague, Czech Republic (2014)
  6. Talk
    Heyer, R.; Kohrs, F.; Benndorf, D.; Rapp, E.; Reichl, U.: Analysing the microbial population structure and metabolic function by metaproteome analysis. Biogas Science 2014 (International Conference on Anaerobic Digestion), Wien, Austria (2014)
  7. Talk
    Muth, T.; Behne, A.; Heyer, R.; Kohrs, F.; Benndorf, D.; Hoffmann, M.; Reichl, U.; Martens, L.: MetaProteomeAnalyzer – a software suite for the functional and taxonomic characterization of (meta)proteome data. 12th Austrian Proteomic Research Symposium, Salzburg, Austria (2014)
  8. Talk
    Benndorf, D.; Kohrs, F.; Magnussen, A.; Heyer, R.; Rapp, E.; Kausmann, R.; Heierman, M.; Klocke, M.; Reichl, U.: Metaproteomics for process monitoring of biogas plants. 8th International Symposium on Anaerobic Microbiology (ISAM8), Innsbruck, Austria (2013)
  9. Talk
    Benndorf, D.; Kuhn, R.; Kohrs, F.; Schlegel, T.; Palese, L.L.; Pollice, A.; Hanreich, A.; Heyer, R.; Kausmann, R.; Heiermann, M. et al.; Klocke, M.; Rapp, E.; Reichl, U.: Metaproteomics for Process Monitoring in Environmental Biotechnology. Annual Conference of the Association for General and Applied Microbiology (VAAM), Bremen, Germany (2013)
  10. Talk
    Benndorf, D.; Heyer, R.; Kohrs, F.; Hanreich, A.; Klocke, M.; Rapp, E.; Reichl, U.: Gel-free metaproteome analysis of a biogas reactor. 1st International Conference on Biogas Microbiology, Leipzig, Germany (2011)
  11. Talk
    Benndorf, D.; Kuhn, R.; Kohrs, F.; Palese, L. L.; Pollice, A.; Hanreich, A.; Heyer, R.; Klocke, M.; Rapp, E.; Reichl, U.: Metaproteome analysis in environmental biotechnology. First international symposium on microbial resource management in biotechnology: concepts & applications, Genth, Belgium (2011)
 
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