Publications of Former Research Groups

Publications of Systems Biology (SBI)

Journal Article (19)

  1. Journal Article
    Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Bullinger, E.; Allgöwer, F.; Gilles, E. D.: Reduction of Mathematical Models of Signal Transduction Networks: Simulation-Based Approach Applied to EGF Receptor Signalling. Systems Biology 1, pp. 159 - 169 (2004)
  2. Journal Article
    Eissing, T.; Conzelmann, H.; Gilles, E. D.; Allgöwer, F.; Bullinger, E.; Scheurich, P.: Bistability Analyses of a Caspase Activation Model for Receptor-induced Apoptosis. The Journal of Biological Chemistry 279, pp. 36892 - 36897 (2004)
  3. Journal Article
    Gagneur, J.; Klamt, S.: Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinformatics 5, 175 (2004)
  4. Journal Article
    Gilles, E. D.: Komplexität in Technik und Biologie. Akademie-Journal: Magazin der Union der Deutschen Akademien der Wissenschaften, pp. 55 - 61 (2004)
  5. Journal Article
    Klamt, S.; Gilles, E. D.: Minimal cut sets in biochemical reaction networks. Bioinformatics 20, pp. 226 - 234 (2004)
  6. Journal Article
    Kremling, A.; Heermann, R.; Centler, F.; Jung, K.; Gilles, E. D.: Analysis of two-component signal transduction by mathematical modeling using the KdpD/KdpE system of Escherichia coli. Biosystems 78 (1-3), pp. 23 - 37 (2004)
  7. Journal Article
    Kremling, A.; Kremling, S.; Gadkar, K.; Doyle, F. J.; Sauter, T.; Bullinger, E.; Allgoewer, F.; Gilles, E. D.: A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions. Genome Research 14 (9), pp. 1773 - 1785 (2004)
  8. Journal Article
    Kremling, A.; Ginkel, M.; Klamt, S.; Gilles, E. D.: Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme. it - Information Technology 46, pp. 12 - 19 (2004)
  9. Journal Article
    Kremling, A.; Kremling, S.; Sauter, T.; Bettenbrock, K.; Gilles, E. D.: Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism. Biosystems 73 (1), pp. 57 - 71 (2004)
  10. Journal Article
    Mangold, M.; Ginkel, M.; Gilles, E. D.: A model library for membrane reactors implemented in the process modelling tool ProMoT. Computers and Chemical Engineering 28 (3), pp. 319 - 332 (2004)
  11. Journal Article
    Motz, S.; Mannal, S.; Gilles, E. D.: Integral approximation: an approach to reduced models for particulate processes. Chemical Engineering Science 59 (5), pp. 987 - 1000 (2004)
  12. Journal Article
    Papin, J. A.; Stelling, J.; Price, N. D.; Klamt, S.; Schuster, S.; Palsson, B. O.: Comparison of network-based pathway analysis methods. Trends in Biotechnology 22 (8), pp. 400 - 405 (2004)
  13. Journal Article
    Saez-Rodriguez, J.; Kremling, A.; Conzelmann, H.; Bettenbrock, K.; Gilles, E. D.: Modular Analysis of Signal Transduction Networks. IEEE Control Systems Magazine 24 (4), pp. 35 - 52 (2004)
  14. Journal Article
    Schmid, J. W.; Mauch, K.; Reuss, M.; Gilles, E. D.; Kremling, A.: Metabolic design based on a coupled gene expression-metabolic network model of tryptophan production in Escherichia coli. Metabolic Engineering 6 (4), pp. 364 - 377 (2004)
  15. Journal Article
    Sosa, N.; Kremling, A.; Ratsch, E.; Rojas, I.: Web-based visualisation of the transcriptional control network of Escherichia coli. In Silico Biology 4 (4), pp. 507 - 515 (2004)
  16. Journal Article
    Stelling, J.; Gilles, E. D.: Mathematical Modeling of Complex Regulatory Networks. IEEE Transactions on Nanobioscience 3 (3), pp. 172 - 179 (2004)
  17. Journal Article
    Stelling, J.; Gilles, E. D.; Doyle III, F. J.: Robustness properties of circadian clock architectures. Proceedings of the National Academy of Sciences U.S.A. 101 (36), pp. 13210 - 13215 (2004)
  18. Journal Article
    Stelling, J.; Sauer, U.; Szallasi, Z.; Doyle III, F. J.; Doyle, J.: Robustness of Cellular Functions. Cell 118 (6), pp. 675 - 685 (2004)
  19. Journal Article
    Stelling, J.: Mathematical models in microbial systems biology. Current Opinion in Microbiology 7 (5), pp. 513 - 518 (2004)

Book Chapter (1)

  1. Book Chapter
    Schoeberl, B.; Ginkel, M.; Gilles, E. D.; Müller, G.: Mathematical modeling of signaling cascades: principles and future prospects. In: Function and Regulation of Cellular Systems: Experiments and Models, pp. 73 - 87 (Eds. Deutsch, A.; Howard, J.; Falcke, M.; Zimmermann, W.). Birkhäuser, Basel [u.a.] (2004)
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