Publications of Former Research Groups

Publications of Systems Biology (SBI)

Journal Article (125)

  1. 1999
    Journal Article
    Tränkle, F.; Kienle, A.; Mohl, K. D.; Zeitz, M.; Gilles, E. D.: Object-oriented modeling of distillation processes. Computers and Chemical Engineering 23 (Suppl.), pp. S743 - S746 (1999)
  2. Journal Article
    Zeyer, K.-P.; Mangold, M.; Obertopp, T.; Gilles, E. D.: The Iron (III)-catalyzed oxidation of ethanol by hydrogen peroxide: a thermokinetic oscillator. Journal of Physical Chemistry 103A (28), pp. 5515 - 5522 (1999)
  3. Journal Article
    Zeyer, K. P.; Mangold, M.; Obertopp, T.; Gilles, E. D.: An oscillating liquid-gas reaction with periodic evaporation: nonlinear analysis and experimental results. Chemical Engineering Science 54 (21), pp. 4845 - 4851 (1999)
  4. 1998
    Journal Article
    Kendlbacher, T.; Kremling, A.; Gilles, E. D.: Modellgestützte Optimierung bei der Prozessführung bioverfahrenstechnischer Prozesse. at - Automatisierungstechnik 46 (8), pp. 375 - 380 (1998)
  5. Journal Article
    Oswald, G.; Mather, M.; Späth, W.; Thomann, W.; Gilles, E. D.: Modellgestützte Prozeßüberwachung und automatische Prozeßführung einer industriellen biologischen Abwasserbehandlungsanlage. at - Automatisierungstechnik 46 (5), pp. 257 - 266 (1998)

Book Chapter (9)

  1. 2008
    Book Chapter
    Conzelmann, H.; Gilles, E. D.: Dynamic pathway modeling of signal transduction networks: a domain-oriented approach. In: Functional Proteomics, pp. 559 - 578 (Eds. Thompson, J. D.; Schaeffer-Reiss, C.; Ueffing, M.). Humana Press, Totowa, NJ (2008)
  2. 2005
    Book Chapter
    Eils, J.; Lawerenz, C.; Astrahantseff, K.; Ginkel, M.; Eils, R.: Databases for Systems Biology. In: Computational Systems Biology, pp. 15 - 38 (Eds. Kriete, A.; Eils, R.). Elsevier, Amsterdam [u.a.] (2005)
  3. Book Chapter
    Kremling, A.; Stelling, J.; Bettenbrock, K.; Kremling, S.; Gilles, E. D.: Metabolic networks: Biology meets engineering sciences. In: Systems Biology: Definitions and Perspectives, pp. 215 - 234 (Eds. Alberghina, L.; Westerhoff, H. V.). Springer, Berlin [u.a.] (2005)
  4. 2004
    Book Chapter
    Schoeberl, B.; Ginkel, M.; Gilles, E. D.; Müller, G.: Mathematical modeling of signaling cascades: principles and future prospects. In: Function and Regulation of Cellular Systems: Experiments and Models, pp. 73 - 87 (Eds. Deutsch, A.; Howard, J.; Falcke, M.; Zimmermann, W.). Birkhäuser, Basel [u.a.] (2004)
  5. 2001
    Book Chapter
    Diehl, M.; Uslu, I.; Findeisen, R.; Schwarzkopf, S.; Allgöwer, F.; Bock, H. G.; Bürner, T.; Gilles, E. D.; Kienle, A.; Schlöder, J. P.: Real-time optimization for large scale processes: Nonlinear model predictive control of a high purity distillation column. In: Online Optimization of Large Scale Systems, pp. 363 - 383 (Eds. Grötschel, M.; Krumke, S. O.; Rambeau, J.). Springer-Verlag (2001)
  6. Book Chapter
    Köhler, R.; Mohl, K. D.; Schramm, H.; Zeitz, M.; Kienle, A.; Mangold, M.; Stein, E.; Gilles, E. D.: Method of Lines within the Simulation Environment DIVA for Chemical Processes. In: Adaptive Method of Lines, pp. 371 - 406 (Eds. Vande Wouwer, A.; Saucez, P.; Schiesser, W.E.). Chapmann and Hall, Boca Raton (2001)
  7. Book Chapter
    Stelling, J.; Kremling, A.; Ginkel, M.; Bettenbrock, K.; Gilles, E. D.: Towards a Virtual Biological Laboratory. In: Foundations of systems biology, pp. 189 - 212 (Ed. Kitano, H.). MIT Press, Cambridge/Massachusetts (2001)
  8. 1999
    Book Chapter
    Stein, E.; Kienle, A.; Gilles, E. D.: Dynamic optimization of multicomponent distillation processes. In: Scientific Computing in Chemical Engineering II, pp. 362 - 369 (Eds. Keil, F.; Mackens, W.; Voß, H.; Werther, J.). Springer, Berlin (1999)
  9. 1998
    Book Chapter
    Spieker, A.; Kloppenburg, E.; Gilles, E. D.: Computer modeling of chromatographic bioseparation. In: Bioseparation and Bioprocessing, pp. 329 - 362 (Ed. Subramanian, G.). Wiley-VCH, Weinheim (1998)

Conference Paper (39)

  1. 2010
    Conference Paper
    Joy, J.; Kremling, A.: Study of the growth of Escherichia coli on mixed substrates using dynamic flux balance analysis. 11th IFAC Symposium on Computer Applications in Biotechnology, Leuven, Belgium, July 07, 2010 - July 09, 2010. IFAC Proceedings Volumes 43 (6), pp. 401 - 406 (2010)
  2. 2009
    Conference Paper
    Disli, I.; Kremling, A.; Kienle, A.: A Model Based Analysis of Multiple Steady States in Continuos Cell Culturer. In: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, pp. 796 - 804 (Eds. Troch, I.; Breitenecker, F.). Mathmod 2009 - 6th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 11, 2009 - February 13, 2009. (2009)
  3. Conference Paper
    Mirschel, S.; Steinmetz, K.; Kremling, A.: Two different approaches for modeling biochemical reaction networks with ProMoT. In: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, Vol. 35, pp. 2322 - 2330 (Eds. Troch, I.; Breitenecker, F.). Mathmod 2009 - 6th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 11, 2009 - February 13, 2009. (2009)
  4. Conference Paper
    Schenkendorf, R.; Kremling, A.; Mangold, M.: Optimal Experimental Design and Model Selection by a Sigma Point Approach. In: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, pp. 2389 - 2395 (Eds. Troch, I.; Breitenecker, F.). Mathmod 2009 - 6th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 11, 2009 - February 13, 2009. (2009)
  5. 2007
    Conference Paper
    Ederer, M.; Gilles, E. D.: Thermodynamic-Kinetic Modeling and Electrical Engineering. In: Proceedings / 2nd Conference Foundations of Systems Biology in Engineering, pp. 135 - 140 (Eds. Allgöwer, F.; Reuss, M.). Foundations of Systems Biology in Engineering (FOSBE), Stuttgart, Germany, September 09, 2007 - September 12, 2007. (2007)
  6. Conference Paper
    Feuer, R.; Ederer, M.; Trachtmann, N.; Sauter, T.; Gilles, E. D.; Sprenger, G.; Sawodny, O.: Methods for analysis of evolutive adaptation of E. coli. In: Proceedings of SICE annual conference, pp. 1359 - 1365. International Conference on Instrumentation, Control and Information Technology (SICE 2007), Takamatsu, Japan, September 17, 2007 - September 20, 2007. (2007)
 
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