Publications of Former Research Groups

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Journal Article (3)

  1. 2012
    Journal Article
    Kolczyk, K.; Samaga, R.; Conzelmann, H.; Mirschel, S.; Conradi, C.: The Process-Interaction-Model: a common representation of rule-based and logical models allows studying signal transduction on different levels of detail. BMC Bioinformatics 13, p. 251 (2012)
  2. 2009
    Journal Article
    Mirschel, S.; Steinmetz, K.; Rempel, M.; Ginkel, M.; Gilles, E. D.: ProMoT: Modular Modeling for Systems Biology. Bioinformatics 25 (5), pp. 687 - 689 (2009)
  3. 2006
    Journal Article
    Saez-Rodriguez, J.; Mirschel, S.; Hemenway, R.; Klamt, S.; Gilles, E. D.; Ginkel, M.: Visual set-up of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 7, 506 (2006)

Conference Paper (1)

  1. 2009
    Conference Paper
    Mirschel, S.; Steinmetz, K.; Kremling, A.: Two different approaches for modeling biochemical reaction networks with ProMoT. In: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, Vol. 35, pp. 2322 - 2330 (Eds. Troch, I.; Breitenecker, F.). Mathmod 2009 - 6th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 11, 2009 - February 13, 2009. (2009)

Talk (1)

  1. 2009
    Talk
    Mirschel, S.: Visualization of complex biochemical models with ProMoT. Waterman Seminar Series on Bioinformatics, Gatersleben, Germany (2009)

Poster (9)

  1. 2009
    Poster
    Kolczyk, K.; Mirschel, S.; Rempel, M.; Gilles, E. D.: Modular Modeling with ProMoT in Systems Biology. German Conference on Bioinformatics, Halle (Saale), Germany (2009)
  2. Poster
    Mirschel, S.; Steinmetz, K.; Rempel, M.; Gilles, E. D.: Modular modeling with ProMoT. German Symposium On Systems Biology 2009, Heidelberg, Germany (2009)
  3. Poster
    Rempel, M.; Mirschel, S.; Steinmetz, K.; Gilles, E. D.: Model Integration of Modular Models using Promot. German Symposium on Systems Biology 2009, Heidelberg (2009)
  4. 2008
    Poster
    Mirschel, S.; Saez-Rodriguez, J.; Ginkel, M.; Gilles, E. D.: Visual support for structural and functional analysis of complex signaling networks in ProMoT. 9th International Conference on Systems Biology (ICSB08), Gothenburg, Sweden (2008)
  5. Poster
    Mirschel, S.; Saez-Rodriguez, J.; Ginkel, M.; Gilles, E. D.: Visual Support for the Structural Analysis of Complex Signaling Networks in ProMoT. Conference on Systems Biology of Mammalian Cells (SBMC08), Dresden, Germany (2008)
  6. Poster
    Steinmetz, K.; Mirschel, S.; Rempel, M.; Ginkel, M.; Gilles, E. D.: Structured and modular modeling with ProMoT. 1st FORSYS Symposium, Berlin, Germany (2008)
  7. 2006
    Poster
    Mirschel, S.; Ginkel, M.; Saez-Rodriguez, J.; Gilles, E. D.: Visualization of complex signaling pathways. 1st Conference on Systems Biology of Mammalian Cells (SBMC06), Heidelberg, Germany (2006)
  8. Poster
    Mirschel, S.; Ginkel, M.; Saez-Rodriguez, J.; Gilles, E. D.: Interactive visualization of complex and structured biological networks. 7th International Conference on Systems Biology (ICSB06), Yokohama, Japan (2006)
  9. 2005
    Poster
    Mirschel, S.; Ginkel, M.; Saez-Rodriguez, J.; Gilles, E. D.: Adaptive visualization of complex hierarchical signaling networks. 4th European Conference On Computational Biology (ECCB05), Madrid, Spain (2005)

Thesis - PhD (1)

  1. 2012
    Thesis - PhD
    Mirschel, S.: Interactive Visualization of Complex Structures in Modular Models for Systems Biology. Dissertation, 191 pp., Shaker, Aachen (2012)
 
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