Publications of Dirk Benndorf

Benndorf, D., Jach, M., Klamt, S., & Reichl, U. (2010)Systembiologie-Ausbildung von Anfang anSystembiologie.de, (2), 82–84.

Roma-Rodriguesa, C., Santosa, P., Benndorf, D., Rapp, E., & Sá-Correiaa, I. (2010)Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteomeProteomics, 73 (8), 1461–1478doi: 10.1016/j.jprot.2010.02.003.

Heyer, R., Schallert, K., Briza, M., & Benndorf, D. (2024)Metaproteomic Analysis of Biogas Plants: A Complete Workflow from Lab to BioinformaticsMetaproteomics: Methods in Molecular Biology99–113New York, NY: Humana Pressdoi: 10.1007/978-1-0716-3910-8_10.

Zoun, R., Schallert, K., Broneske, D., Trifonova, I., Chen, X., Heyer, R., Benndorf, D., & Saake, G. (2019)Efficient transformation of protein sequence databases to columnar index schemaIn: Database and Expert Systems Applications. DEXA 2019, 67–72doi: 10.1007/978-3-030-27684-3_10.

Zoun, R., Campero Durand, G., Schallert , K., Patrikar, A., Broneske, D., Fenske, W., Heyer, R., Benndorf, D., & Saake, G. (2018)Protein Identification as a Suitable Application for Fast Data ArchitectureIn: Database and Expert Systems Applications: DEXA 2018 International Workshops BDMICS, BIOKDD, and TIR, 168–178doi: 10.1007/978-3-319-99133-7_14.

Kuhn, R., Benndorf, D., Rapp, E., Reichl, U., Pollice, A., & Palese, L. (2010)Metaproteomanalyse von Klärschlamm aus MembranbioreaktorenIn: Chemie Ingenieur Technik, 1539–1540 doi: 10.1002/cite.201050697.

Hellwig, P., Kautzner, D., Benndorf, D., & Reichl, U.Identification of newly synthesized proteins in microbial communities using BONCAT and click chemistryPresented at: 5^th International Metaproteomics SymposiumAvignon (France), April 25, 2023.

Küchler, J., Opitz, P., Rüdiger, D., Kupke, S. Y., Genzel, Y., Benndorf, D., & Reichl, U.Absolute quantification of influenza A virus proteins during single-round replication in different host cellsPresented at: 6^th Workshop on Virus DynamicsNagoya (Japan), July 4, 2023.

Khesali Aghtaei, H., Benndorf, D., & Reichl, U.Biological methanation using a tubular foam bioreactorPresented at: Smart Process Systems Engineering 2022 Towards Sustainable & Circular Production Processes (SmartProSys 2022)Magdeburg, Germany, March 2, 2022.

Khesali Aghtaei, H., Benndorf, D., Sczyrba, A., & Reichl, U.Adaptation of a methanogenic community to demand-oriented biological methanationPresented at: 4th International Metaproteomics SymposiumLuxembourg, Luxembourg, September 27, 2021.

Hellwig, P., Benndorf, D., & Reichl, U.Combined metagenomics and metaproteomics of a two-stage biogas plant questions the benefit of the hydrolysis fermenter for process performancePresented at: 4th International Metaproteomics Symposium, Luxembourg, 2021Luxembourg, Luxembourg, September 27, 2021.

Khesali Aghtaei, H., Benndorf, D., & Reichl, U.Adaptation of a microbial community to demand-oriented biological methanationPresented at: V. International Conference on Monitoring & Process Control of Anaerobic Digestion Processesvirtual, March 23, 2021.

Benndorf, D.Was kann die Proteomik zur Klärung des Biogas-Metabolismus leisten?Presented at: Abschlusssymposium des FNR/BMEL-Verbundvorhabens Modisto „Dynamik des Intermediat-Stoffwechsels in Biogasprozessen“Virtual Meeting, November 17, 2020.

Benndorf, D.Recent experimental and bioinformatic developments in metaproteomicsPresented at: Metaproteomics - The Gateway to Microbial Commmunity Structure-Function AnalysisSheffield, UK, September 4, 2019.

Heyer, R., Biermann, R., Isermann, B., Lehmann, T., Buss, E., Schallert, K., Vilchez-Vargas, R., Sydor, S., Link, A., Canbay, A., Reichl, U., & Benndorf, D.System diagnostics of the human gut microbiome using metaproteome analysis of fecal samplesPresented at: Deutscher Kongress für LaboratoriumsmedizinMagdeburg, Germany, September 25, 2019.

Heyer, R., Schallert, K., Püttker, S., Kohrs, F., Hellwig, P., Theuerl, S., Schlüter, A., Reichl, U., & Benndorf, D.Identification of process parameters shaping microbial communities in biogas plants using large scale metaproteome analysisPresented at: Annual Conference of the Association for General and Applied Microbiology (VAAM)Mainz, Germany, March 17, 2019.

Khesali, H., Amirhossein, A., Benndorf, D., & Reichl, U.Biological conversion of CO2 from a biogas plant to CH4Presented at: Young Professionals Conference on Process Engineering (YCOPE 2019)Magdeburg, March 18, 2019.

Benndorf, D.Speedup of metaproteomics pipelines - from samples to microbial community data in less than 24 hoursPresented at: 3rd International Metaproteome Symposium Leipzig, Germany, December 3, 2018.

Heyer, R., Kohrs, F., Benndorf, D., Schallert, K., deVrieze, J., Rapp, E., & Reichl, U.Proteotyping enables grouping and classification of biogas plant microbiomesPresented at: Proteomic Forum 2017Potsdam, Germany, April 2, 2017.

Heyer, R., Schallert, K., Kohrs, F., Benndorf, D., Rapp, E., & Reichl, U.Function of the different microbial groups within the biogas process and their dependence on process parametersPresented at: 3rd International Conference on Biogas Microbiology (ICBM-3)Wageningen, The Netherlands, May 1, 2017.