Publications of Dirk Benndorf

Journal Article (62)

2024
Journal Article
Hellwig, P., Dittrich, A., Heyer, R., Reichl, U., & Benndorf, D. (2024)Detection, isolation and characterization of phage-host complexes using BONCAT and click chemistryFrontiers in Microbiology, 15, 1434301doi: 10.3389/fmicb.2024.1434301.
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Hellwig, P., Kautzner, D., Heyer, R., Dittrich, A., Wibberg, D., Busche, T., Winkler, A., Reichl, U., & Benndorf, D. (2024)Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteinsISME Communications, 4 (1), ycae153doi: 10.1093/ismeco/ycae153.
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Heyer, R., Hellwig, P., Maus, I., Walke, D., Schlüter, A., Hassa, J., Sczyrba, A., Tubbesing, T., Klocke, M., Mächtig, T., Schallert, K., Seick, I., Reichl, U., & Benndorf, D. (2024)Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenterWater Research, 250, 121020doi: 10.1016/j.watres.2023.121020.
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Khesali Aghtaei, H., Heyer, R., Reichl, U., & Benndorf, D. (2024)Improved biological methanation using tubular foam-bed reactorBiotechnology for Biofuels and Bioproducts, 17, 66doi: 10.1186/s13068-024-02509-1.
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Riedel, R., Commichau, F. M., Benndorf, D., Hertel, R., Holzer, K., Hoelzle, L. E., Mardoukhi, M. S. Y., Noack, L. E., & Martienssen, M. (2024)Biodegradation of selected aminophosphonates by the bacterial isolate Ochrobactrum sp. BTU1Microbiological Research, 280, 127600doi: 10.1016/j.micres.2024.127600.
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Riedel, R., Meißner, K., Kaschubowski, A., Benndorf, D., Martienssen, M., & Braun, B. (2024)Laundry Isolate Delftia sp. UBM14 Capable of Biodegrading Industrially Relevant AminophosphonatesMicroorganisms, 12 (8), 1664doi: 10.3390/microorganisms12081664.
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2023
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Dogra, T., Pelz, L., Boehme, J. D., Küchler, J., Kershaw, O., Marichal-Gallardo, P., Baelkner, M., Hein, M. D., Gruber, A. D., Benndorf, D., Genzel, Y., Bruder, D., Kupke, S. Y., & Reichl, U. (2023)Generation of “OP7 chimera” defective interfering influenza A particle preparations free of infectious virus that show antiviral efficacy in miceScientific Reports, 13, 20936doi: 10.1038/s41598-023-47547-1.
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Hassa, J., Tubbesing, T. J., Maus, I., Heyer, R., Benndorf, D., Effenberger, M., Henke, C., Osterholz, B., Beckstette, M., Pühler, A., Sczyrba, A., & Schlüter, A. (2023)Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and MetaproteomicsMicroorganisms, 11 (10), 2412doi: 10.3390/microorganisms11102412.
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Küchler, J., Willenbücher, K., Reiß, E., Nuß, L., Conrady, M., Ramm, P., Schimpf, U., Reichl, U., Szewzyk, U., & Benndorf, D. (2023)Degradation Kinetics of Lignocellulolytic Enzymes in a Biogas Reactor Using Quantitative Mass SpectrometryFermentation, 9 (1), 67doi: 10.3390/fermentation9010067.
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2022
Journal Article
Khesali Aghtaei, H., Püttker, S., Maus, I., Heyer, R., Huang, L., Sczyrba, A., Reichl, U., & Benndorf, D. (2022)Adaptation of a microbial community to demand-oriented biological methanationBiotechnology for Biofuels and Bioproducts, 15, 125doi: 10.1186/s13068-022-02207-w.
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Küchler, J., Püttker, S., Lahmann, P., Genzel, Y., Kupke, S. Y., Benndorf, D., & Reichl, U. (2022)Absolute quantification of viral proteins during single-round replication of MDCK suspension cellsJournal of Proteomics, 259, 104544doi: 10.1016/j.jprot.2022.104544.
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Schallert, K., Verschaffelt, P., Mesuere, B., Benndorf, D., Martens, L., & Van Den Bossche, T. (2022)Pout2Prot: An Efficient Tool to Create Protein (Sub)groups from Percolator Output FilesJournal of Proteome Research, 21 (4), 1175–1180doi: 10.1021/acs.jproteome.1c00685.
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Scoma, A., Khor, W., Coma, M., Heyer, R., Props, R., Bouts, T., Benndorf, D., Li, D., Zhang, H., & Rabaey, K. (2022)Lignocellulose Fermentation Products Generated by Giant Panda Gut Microbiomes Depend Ultimately on pH Rather than Portion of Bamboo: A Preliminary StudyMicroorganisms, 10 (5), 978doi: 10.3390/microorganisms10050978.
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Sydor, S., Dandyk, C., Schwerdt, J., Manka, P., Benndorf, D., Lehmann, T., Schallert, K., Wolf, M., Reichl, U., Canbay, A., Bechmann, L. P., & Heyer, R. (2022)Discovering Biomarkers for Non-Alcoholic Steatohepatitis Patients with and without Hepatocellular Carcinoma Using Fecal MetaproteomicsInternational Journal of Molecular Sciences, 23 (16), 8841doi: 10.3390/ijms23168841.
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2021
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Bartholomäus, A., Kolte, B., Mustafayeva, A., Goebel, I., Fuchs, S., Benndorf, D., Engelmann, S., & Ignatova, Z. (2021)smORFer: a modular algorithm to detect small ORFs in prokaryotesNucleic Acids Research (London), 49 (15), e89doi: 10.1093/nar/gkab477.
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Bastida, F., Jehmlich, N., Starke, R., Schallert, K., Benndorf, D., López-Mondéjar, R., Plaza, C., Freixino, Z., Ramírez-Ortuño, C., Ruiz-Navarro, A., Díaz-López, M., Vera, A., Moreno, J. L., Eldridge, D. J., García, C., & Delgado-Baquerizo, M. (2021)Structure and function of bacterial metaproteomes across biomesSoil Biology and Biochemistry, 160, 108331doi: 10.1016/j.soilbio.2021.108331.
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Biemann, R., Buß, E., Benndorf, D., Lehmann, T., Schallert, K., Püttker, S., Reichl, U., Isermann, B., Schneider, J. G., Saake, G., & Heyer, R. (2021)Fecal Metaproteomics Reveals Reduced Gut Inflammation and Changed Microbial Metabolism Following Lifestyle-Induced Weight LossBiomolecules, 11 (5), 726doi: 10.3390/biom11050726.
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De Vrieze, J., Heyer, R., Props, R., Van Meulebroek, L., Gille, K., Vanhaecke, L., Benndorf, D., & Boon, N. (2021)Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profilesWater Research, 202 (1), 117422doi: 10.1016/j.watres.2021.117422.
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Hassa, J., Klang, J., Benndorf, D., Pohl, M., Hülsemann, B., Mächtig, T., Effenberger, M., Pühler, A., Schlüter, A., & Theuerl, S. (2021)Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas PlantsMicroorganisms, 9 (7), 1457doi: 10.3390/microorganisms9071457.
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Hein, M. D., Kollmus, H., Marichal-Gallardo, P., Püttker, S., Benndorf, D., Genzel, Y., Schughart, K., Kupke, S. Y., & Reichl, U. (2021)OP7, a novel influenza A virus defective interfering particle: production, purification, and animal experiments demonstrating antiviral potentialApplied Microbiology and Biotechnology, 105 (1), 129–146doi: 10.1007/s00253-020-11029-5.
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