Max Planck Institute for Dynamics of Complex Technical Systems

Publications of Dirk Benndorf

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Journal Article (58)

2024

Journal Article

Heyer, R., Hellwig, P., Maus, I., Walke, D., Schlüter, A., Hassa, J., Sczyrba, A., Tubbesing, T., Klocke, M., Mächtig, T., Schallert, K., Seick, I., Reichl, U., & Benndorf, D. (2024)Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenterWater Research, 250, 121020doi: 10.1016/j.watres.2023.121020.

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Riedel, R., Commichau, F. M., Benndorf, D., Hertel, R., Holzer, K., Hoelzle, L. E., Mardoukhi, M. S. Y., Noack, L. E., & Martienssen, M. (2024)Biodegradation of selected aminophosphonates by the bacterial isolate Ochrobactrum sp. BTU1Microbiological Research, 280, 127600doi: 10.1016/j.micres.2024.127600.

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2023

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Dogra, T., Pelz, L., Boehme, J. D., Küchler, J., Kershaw, O., Marichal-Gallardo, P., Baelkner, M., Hein, M. D., Gruber, A. D., Benndorf, D., Genzel, Y., Bruder, D., Kupke, S. Y., & Reichl, U. (2023)Generation of “OP7 chimera” defective interfering influenza A particle preparations free of infectious virus that show antiviral efficacy in miceScientific Reports, 13, 20936doi: 10.1038/s41598-023-47547-1.

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Hassa, J., Tubbesing, T. J., Maus, I., Heyer, R., Benndorf, D., Effenberger, M., Henke, C., Osterholz, B., Beckstette, M., Pühler, A., Sczyrba, A., & Schlüter, A. (2023)Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and MetaproteomicsMicroorganisms, 11 (10), 2412doi: 10.3390/microorganisms11102412.

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Küchler, J., Willenbücher, K., Reiß, E., Nuß, L., Conrady, M., Ramm, P., Schimpf, U., Reichl, U., Szewzyk, U., & Benndorf, D. (2023)Degradation Kinetics of Lignocellulolytic Enzymes in a Biogas Reactor Using Quantitative Mass SpectrometryFermentation, 9 (1), 67doi: 10.3390/fermentation9010067.

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2022

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Khesali Aghtaei, H., Püttker, S., Maus, I., Heyer, R., Huang, L., Sczyrba, A., Reichl, U., & Benndorf, D. (2022)Adaptation of a microbial community to demand-oriented biological methanationBiotechnology for Biofuels and Bioproducts, 15, 125doi: 10.1186/s13068-022-02207-w.

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Küchler, J., Püttker, S., Lahmann, P., Genzel, Y., Kupke, S. Y., Benndorf, D., & Reichl, U. (2022)Absolute quantification of viral proteins during single-round replication of MDCK suspension cellsJournal of Proteomics, 259, 104544doi: 10.1016/j.jprot.2022.104544.

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Schallert, K., Verschaffelt, P., Mesuere, B., Benndorf, D., Martens, L., & Van Den Bossche, T. (2022)Pout2Prot: An Efficient Tool to Create Protein (Sub)groups from Percolator Output FilesJournal of Proteome Research, 21 (4), 1175–1180doi: 10.1021/acs.jproteome.1c00685.

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Scoma, A., Khor, W., Coma, M., Heyer, R., Props, R., Bouts, T., Benndorf, D., Li, D., Zhang, H., & Rabaey, K. (2022)Lignocellulose Fermentation Products Generated by Giant Panda Gut Microbiomes Depend Ultimately on pH Rather than Portion of Bamboo: A Preliminary StudyMicroorganisms, 10 (5), 978doi: 10.3390/microorganisms10050978.

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Sydor, S., Dandyk, C., Schwerdt, J., Manka, P., Benndorf, D., Lehmann, T., Schallert, K., Wolf, M., Reichl, U., Canbay, A., Bechmann, L. P., & Heyer, R. (2022)Discovering Biomarkers for Non-Alcoholic Steatohepatitis Patients with and without Hepatocellular Carcinoma Using Fecal MetaproteomicsInternational Journal of Molecular Sciences, 23 (16), 8841doi: 10.3390/ijms23168841.

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2021

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Bartholomäus, A., Kolte, B., Mustafayeva, A., Goebel, I., Fuchs, S., Benndorf, D., Engelmann, S., & Ignatova, Z. (2021)smORFer: a modular algorithm to detect small ORFs in prokaryotesNucleic Acids Research (London), 49 (15), e89doi: 10.1093/nar/gkab477.

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Bastida, F., Jehmlich, N., Starke, R., Schallert, K., Benndorf, D., López-Mondéjar, R., Plaza, C., Freixino, Z., Ramírez-Ortuño, C., Ruiz-Navarro, A., Díaz-López, M., Vera, A., Moreno, J. L., Eldridge, D. J., García, C., & Delgado-Baquerizo, M. (2021)Structure and function of bacterial metaproteomes across biomesSoil Biology and Biochemistry, 160, 108331doi: 10.1016/j.soilbio.2021.108331.

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Biemann, R., Buß, E., Benndorf, D., Lehmann, T., Schallert, K., Püttker, S., Reichl, U., Isermann, B., Schneider, J. G., Saake, G., & Heyer, R. (2021)Fecal Metaproteomics Reveals Reduced Gut Inflammation and Changed Microbial Metabolism Following Lifestyle-Induced Weight LossBiomolecules, 11 (5), 726doi: 10.3390/biom11050726.

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De Vrieze, J., Heyer, R., Props, R., Van Meulebroek, L., Gille, K., Vanhaecke, L., Benndorf, D., & Boon, N. (2021)Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profilesWater Research, 202 (1), 117422doi: 10.1016/j.watres.2021.117422.

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Hassa, J., Klang, J., Benndorf, D., Pohl, M., Hülsemann, B., Mächtig, T., Effenberger, M., Pühler, A., Schlüter, A., & Theuerl, S. (2021)Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas PlantsMicroorganisms, 9 (7), 1457doi: 10.3390/microorganisms9071457.

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Hein, M. D., Kollmus, H., Marichal-Gallardo, P., Püttker, S., Benndorf, D., Genzel, Y., Schughart, K., Kupke, S. Y., & Reichl, U. (2021)OP7, a novel influenza A virus defective interfering particle: production, purification, and animal experiments demonstrating antiviral potentialApplied Microbiology and Biotechnology, 105 (1), 129–146doi: 10.1007/s00253-020-11029-5.

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Meinusch, N., Kramer, S., Körner, O., Wiese, J., Seick, I., Beblek, A., Berges, R., Illenberger, B., Illenberger, M., Uebbing, J., Wolf, M., Saake, G., Benndorf, D., Reichl, U., & Heyer, R. (2021)Integrated Cycles for Urban Biomass as a Strategy to Promote a CO2-Neutral Society—A Feasibility StudySustainability, 13 (17), 9505doi: 10.3390/su13179505.

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Starke, R., Siles, J. A., Fernandes, M. L. P., Schallert, K., Benndorf, D., Plaza, C., Jehmlich, N., Delgado-Baquerizo, M., & Bastida, F. (2021)The structure and function of soil archaea across biomesJournal of Proteomics, 237, 104147doi: 10.1016/j.jprot.2021.104147.

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Van Den Bossche, T., Arntzen, M. Ø., Becher, D., Benndorf, D., Eijsink, V. G. H., Henry, C., Jagtap, P. D., Jehmlich, N., Juste, C., Kunath, B. J., Mesuere, B., Muth, T., Pope, P. B., Seifert, J., Tanca, A., Uzzau, S., Wilmes, P., Hettich, R. L., & Armengaud, J. (2021)The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomesMicrobiome, 9 (1), 243doi: 10.1186/s40168-021-01176-w.

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Van Den Bossche, T., Kunath, B. J., Schallert, K., Schäpe, S. S., Abraham, P. E., Armengaud, J., Arntzen, M. Ø., Bassignani, A., Benndorf, D., Fuchs, S., Giannone, R. J., Griffin, T. J., Hagen, L. H., Halder, R., Henry, C., Hettich, R. L., Heyer, R., Jagtap, P., Jehmlich, N., Jensen, M., Juste, C., Kleiner, M., Langella, O., Lehmann, T., Leith, E., May, P., Mesuere, B., Miotello, G., Peters, S. L., Pible, O., Reichl, U., Renard, B. Y., Schiebenhoefer, H., Scryba, A., Tanca, A., Trappe, K., Trezzi, J.-P., Uzzau, S., Verschaffelt, P., von Bergen, M., Wilmes, P., Wolf, M., Martens, L., & Muth, T. (2021)Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established WorkflowsNature Communications, 12 (1), 7305doi: 10.1038/s41467-021-27542-8.

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