Publications of Dirk Benndorf

Koch, S., Benndorf, D., Reichl, U., & Klamt, S.Prediction of Community Compositions in Stoichiometric Community ModelsPresented at: 4th Conference on Constraint-Based Reconstruction and AnalysisHeidelberg, Germany, September 16, 2015.

Muth, T., Behne, A., Heyer, R., Kohrs, F., Hoffmann, M., Benndorf, D., Lehtevä, M., Reichl, U., Martens, L., & Rapp, E.Metaproteomeanalyzer: a software tool for functional and taxonomic characterization of metaproteome dataPresented at: Konferenz Proteomic ForumBerlin, March 22, 2015.

Püttker, S., Kohrs, F., Benndorf, D., Heyer, R., Rapp, E., & Reichl, U.Analyses of activated sludge metaproteomes of a wastewater treatment plant a metaproteomic data setPresented at: 6th Congress of European Microbiologists - FEMS Microbiology Congress 2015Maastricht, Belgien, June 7, 2015.

Bensmann, A., Hanke-Rauschenbach, R., Heyer, R., Kohrs, F., Benndorf, D., Reichl, U., & Sundmacher, K.Methanisierung von erneuerbarem Wasserstoff in Biogas-Anlagen,Presented at: ProcessNet-Anual MeetingAachen, Germany, September 30, 2014.

Kohrs, F., Benndorf, D., Heyer, R., Rapp, E., & Reichl, U.Metaproteomics for Process Monitoring of Biogas PlantsPresented at: ProcessNet-Jahrestagung und 31. DECHEMA-Jahrestagung der Biotechnologen 2014Aachen, Germany, September 30, 2014.

Kohrs, F., Benndorf, D., Klocke, M., Rapp, E., & Reichl, U.Metaproteomics for Process Monitoring of Biogas PlantsPresented at: DECHEMA Himmelfahrtstagung 2014 (Biomaterials-Made in Bioreactors)Radebeul, Germany, June 26, 2014.

Heyer, R., Muth, T., Behne, A., Kohrs, F., Benndorf, D., Kausmann, R., Heiermann, M., Klocke, M., Rapp, E., & Reichl, U.METAPROTEOMEANALYZER: A SOFTWARE TOOL FOR FUNCTIONAL AND TAXONOMIC CHARACTERIZATION OF METAPROTEOME DATAPresented at: Annual Conference of the Association for General and Applied Microbiology (VAAM)Bremen, Germany, March 10, 2013.

Heyer, R., Muth, T., Kohrs, F., Behne, A., Benndorf, D., Martens , L., Klocke, M., Rapp, E., & Reichl, U.Biogas plant metaproteome analysis and biomarker search by using the software MetaProteomeAnalyserPresented at: 5th Congress of European Microbiologists (FEMS 2013)Leipzig, Germany, July 21, 2013.

Kluge, S., Rapp, E., Benndorf, D., Genzel, Y., Scharfenberg, K., & Reichl, U.Proteomic monitoring along the adaptation of MDCK cells from adherent to suspension growth with respect to influenza virus vaccine productionPresented at: 23rd ESACT Meeting Lille, France, June 23, 2013.

Kluge, S., Rourou, S., Vester, D., Majoul, S., Benndorf, D., Genzel, Y., Rapp, E., Kallel, H., & Reichl, U.Exploring virus-host cell interaction on the proteome level: Rabies virus replication in Vero cellsPresented at: Proteomic Forum 2013Berlin, Germany, March 17, 2013.

Kohrs, F., Magnussen, A., Benndorf, D., Heyer, R., Klocke, M., Rapp, E., & Reichl, U.Evaluation of multidimensional separation techniques to increase identification of proteins from anaerobic digestersPresented at: Annual Conference of the Association for General and Applied Microbiology (VAAM)Bremen (Germany), March 10, 2013.

Muth, T., Heyer, R., Behne, A., Kohrs, F., Benndorf, D., Rapp, E., & Reichl, U.Meta-Proteome-Analyzer: A software tool specifically developed for the functional and taxonomic characterization of metaproteome data.Presented at: GCB2012: German conference on bioinformaticsJena, Germany, September 19, 2012.

Kluge, S., Hoffmann, M., Rapp, E., Benndorf, D., & Reichl, U.Proteome analysis of a bacterial mixed culturePresented at: Proteomic Forum 2011Berlin, April 3, 2011.

Hellwig, P., Dittrich, A., Heyer, R., Reichl, U., & Benndorf, D. (2024)Detection, isolation and characterisation of phage-host complexes using BONCAT and click chemistrybioRxivdoi: 10.1101/2024.02.13.580147.

Van Den Bossche, T., Kunath, B. J., Schallert, K., Schäpe, S. S., Abraham, P. E., Armengaud, J., Arntzen, M. Ø., Bassignani, A., Benndorf, D., Fuchs, S., Giannone, R. J., Griffin, T. J., Hagen, L. H., Halder, R., Henry, C., Hettich, R. L., Heyer, R., Jagtap, P., Jehmlich, N., Jensen, M., Juste, C., Kleiner, M., Langella, O., Lehmann, T., Leith, E., May, P., Mesuere, B., Miotello, G., Peters, S. L., Pible, O., Reichl, U., Renard, B. Y., Schiebenhoefer, H., Scryba, A., Tanca, A., Trappe, K., Trezzi, J.-P., Uzzau, S., Verschaffelt, P., von Bergen, M., Wilmes, P., Wolf, M., Martens, L., & Muth, T. (2021)Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established WorkflowsbioRxivdoi: 10.1101/2021.03.05.433915 .