Publications of Marcus Hoffmann

Journal Article (19)

2022
Journal Article
Hütte, H. J., Tiemann, B., Shcherbakova, A., Grote, V., Hoffmann, M., Povolo, L., Lommel, M., Strahl, S., Vakhrushev, S. Y., Rapp, E., Buettner, F. F. R., Halim, A., Imberty, A., & Bakker, H. (2022)A Bacterial Mannose Binding Lectin as a Tool for the Enrichment of C- and O-Mannosylated PeptidesAnalytical Chemistry, 94 (20), 7329–7338doi: 10.1021/acs.analchem.2c00742.
2021
Journal Article
Gücüm, S., Sakson, R., Hoffmann, M., Grote, V., Becker, C., Pakari, K., Beedgen, L., Thiel, C., Rapp, E., Ruppert, T., Thumberger, T., & Wittbrodt, J. (2021)A patient-based medaka alg2 mutant as a model for hypo-N-glycosylationDevelopment, 148 (11), dev199385doi: 10.1242/dev.199385.
Journal Article
Kawahara, R., Chernykh, A., Alagesan, K., Bern, M., Cao, W., Chalkley, R. J., Cheng, K., Choo, M. S., Edwards, N., Goldman, R., Hoffmann, M., Hu, Y., Huang, Y., Kim, J. Y., Kletter, D., Liquet, B., Liu, M., Mechref, Y., Meng, B., Neelamegham, S., Nguyen-Khuong, T., Nilsson, J., Pap, A., Park, G. W., Parker, B. L., Pegg, C. L., Penninger, J. M., Phung, T. K., Pioch, M., Rapp, E., Sakalli, E., Sanda, M., Schulz, B. L., Scott, N. E., Sofronov, G., Stadlmann, J., Vakhrushev, S. Y., Woo, C. M., Wu, H.-Y., Yang, P., Ying, W., Zhang, H., Zhang, Y., Zhao, J., Zaia, J., Haslam, S. M., Palmisano, G., Yoo, J. S., Larson, G., Khoo, K.-H., Medzihradszky, K. F., Kolarich, D., Packer, N. H., & Thaysen-Andersen, M. (2021)Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysisNature Methods, 18, 1304–1316doi: 10.1038/s41592-021-01309-x.
Journal Article
Noor, S. I., Hoffmann, M., Rinis, N., Bartels, M. F., Winterhalter, P. R., Hoelscher, C., Hennig, R., Himmelreich, N., Thiel, C., Ruppert, T., Rapp, E., & Strahl, S. (2021)Glycosyltransferase POMGNT1 deficiency strengthens N-cadherin-mediated cell-cell adhesionJournal of Biological Chemistry, 100433doi: 10.1016/j.jbc.2021.100433.
Journal Article
Pralow, A., Hoffmann, M., Nguyen-Khuong, T., Pioch, M., Hennig, R., Genzel, Y., Rapp, E., & Reichl, U. (2021)Comprehensive N‐glycosylation analysis of the influenza A virus proteins HA and NA from adherent and suspension MDCK cellsThe FEBS Journal, 288 (16), 4869–4891doi: 10.1111/febs.15787.
2020
Journal Article
Rexer, T., Wenzel, L., Hoffmann, M., Tischlik, S., Bergmann, C., Grote, V., Boecker, S., Bettenbrock, K., Schildbach, A., Kottler, R., Mahour, R., Rapp, E., Pietzsch, M., & Reichl, U. (2020)Synthesis of lipid-linked oligosaccharides by a compartmentalized multi-enzyme cascade for the in vitro N-glycosylation of peptidesJournal of Biotechnology, 322 (10), 54–65doi: 10.1016/j.jbiotec.2020.07.003.
2019
Journal Article
Heyer, R., Schallert, K., Siewert, C., Kohrs, F., Greve, J., Maus, I., Klang, J., Klocke, M., Heiermann, M., Hoffmann, M., Püttker, S., Calusinska, M., Zoun, R., Saake, G., Benndorf, D., & Reichl, U. (2019)Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plantsMicrobiome, (7), 69doi: 10.1186/s40168-019-0673-y.
2018
Journal Article
Hoffmann, M., Pioch, M., Pralow, A., Hennig, R., Kottler, R., Reichl, U., & Rapp, E. (2018)The Fine Art of Destruction: A Guide to In-Depth Glycoproteomic Analyses – Exploiting the Diagnostic Potential of Fragment IonsProteomics, 18 (24), e1800282doi: 10.1002/pmic.201800282.
Journal Article
Pioch, M., Hoffmann, M., Pralow, A., Reichl, U., & Rapp, E. (2018)GlyXtoolMS: An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry DataAnalytical Chemistry, 90 (20), 11908–11916doi: 10.1021/acs.analchem.8b02087.
2017
Journal Article
Pralow, A., Hoffmann, M., Nguyen-Khuong, T., Rapp, E., & Reichl, U. (2017)Improvement of the glycoproteomic toolbox with the discovery of a unique C-terminal cleavage specificity of flavastacin for N-glycosylated asparagineScientific Reports, 7, 11419doi: 10.1038/s41598-017-11668-1.
2016
Journal Article
Hennig, R., Cajic, S., Borowiak, M., Hoffmann, M., Kottler, R., Reichl, U., & Rapp, E. (2016)Towards personalized diagnostics via longitudinal study of the human plasma N-glycomeBiochimica et Biophysica Acta (BBA) - General Subjects, 1860 (8), 1728–1738doi: 10.1016/j.bbagen.2016.03.035.
Journal Article
Heyer, R., Benndorf, D., Kohrs, F., De Vrieze, J., Boon, N., Hoffmann, M., Rapp, E., Schlüter, A., Sczyrba, A., & Reichl, U. (2016)Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor typeBiotechnology for Biofuels, 9 (9), 155doi: 10.1186/s13068-016-0572-4.
Journal Article
Hoffmann, M., Marx, K., Reichl, U., Wuhrer, M., & Rapp, E. (2016)Site-specific O-Glycosylation Analysis of Human Blood Plasma ProteinsMolecular and Cellular Proteomics, 15 (2), 624–641doi: 10.1074/mcp.M115.053546 .
2015
Journal Article
Kohrs, F., Wolter, S., Benndorf, D., Heyer, R., Hoffmann, M., Rapp, E., Bremges, A., Sczyrba, A., Schlüter, A., & Reichl, U. (2015)Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communitiesProteomics, 15 (20), 3585–3589doi: 10.1002/pmic.201400557.
Journal Article
Muth, T., Behne, A., Heyer, R., Kohrs, F., Benndorf, D., Hoffmann, M., Lehteva, M., Reichl, U., Martens, L., & Rapp, E. (2015)The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and InterpretationJournal of Proteome Research, 14 (3), 1557–1565doi: 10.1021/pr501246w.
2013
Journal Article
Bakovic, M. P., Selman, M. H. J., Hoffmann, M., Rudan, I., Campbell, H., Deelder, A. M., Lauc, G., & Wuhrer, M. (2013)High-Throughput IgG Fc N-Glycosylation Profiling by Mass Spectrometry of GlycopeptidesJournal of Proteome Research, 12 (2), 821–831doi: 10.1021/pr300887z.
2012
Journal Article
Kluge, S., Hoffmann, M., Benndorf, D., Rapp, E., & Reichl, U. (2012)Proteomic tracking and analysis of a bacterial mixed cultureProteomics, 12 (12), 1893–1901doi: 10.1002/pmic.201100362.
Journal Article
Selman, M. H. J., Hoffmann, M., Zauner, G., McDonnell, L. A., Balog, C. I. A., Rapp, E., Deelder, A. M., & Wuhrer, M. (2012)MALDI-TOF-MS analysis of sialylated glycans and glycopeptides using 4-chloro-α-cyanocinnamic acid matrixProteomics, 12 (9), 1337–1348doi: 10.1002/pmic.201100498.
Journal Article
Zauner, G., Hoffmann, M., Rapp, E., Koeleman, C. A. M., Dragan, I., Deelder André M., Wuhrer, M., & Hensbergen, P. J. (2012)Glycoproteomic Analysis of Human Fibrinogen Reveals Novel Regions of O‑GlycosylationJournal of Proteome Research, 11 (12), 5804–5814doi: 10.1021/pr3005937.

Book Chapter (1)

2021
Book Chapter
Alagesan, K., Hoffmann, M., Rapp, E., & Kolarich, D. (2021)Glycoproteomics Technologies in GlycobiotechnologyAdvances in Glycobiotechnology413–434Cham, Switzerland: Springerdoi: 10.1007/10_2020_144.
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