Publications of Marcus Hoffmann

Wenzel, L., Hoffmann, M., Rapp, E., Rexer, T., & Reichl, U. (2023)Cell-free N-glycosylation of peptides using synthetic lipid-linked hybrid and complex N-glycansFrontiers in Molecular Biosciences, 10, 1266431doi: 10.3389/fmolb.2023.1266431.

Hütte, H. J., Tiemann, B., Shcherbakova, A., Grote, V., Hoffmann, M., Povolo, L., Lommel, M., Strahl, S., Vakhrushev, S. Y., Rapp, E., Buettner, F. F. R., Halim, A., Imberty, A., & Bakker, H. (2022)A Bacterial Mannose Binding Lectin as a Tool for the Enrichment of C- and O-Mannosylated PeptidesAnalytical Chemistry, 94 (20), 7329–7338doi: 10.1021/acs.analchem.2c00742.

Gücüm, S., Sakson, R., Hoffmann, M., Grote, V., Becker, C., Pakari, K., Beedgen, L., Thiel, C., Rapp, E., Ruppert, T., Thumberger, T., & Wittbrodt, J. (2021)A patient-based medaka alg2 mutant as a model for hypo-N-glycosylationDevelopment, 148 (11), dev199385doi: 10.1242/dev.199385.

Kawahara, R., Chernykh, A., Alagesan, K., Bern, M., Cao, W., Chalkley, R. J., Cheng, K., Choo, M. S., Edwards, N., Goldman, R., Hoffmann, M., Hu, Y., Huang, Y., Kim, J. Y., Kletter, D., Liquet, B., Liu, M., Mechref, Y., Meng, B., Neelamegham, S., Nguyen-Khuong, T., Nilsson, J., Pap, A., Park, G. W., Parker, B. L., Pegg, C. L., Penninger, J. M., Phung, T. K., Pioch, M., Rapp, E., Sakalli, E., Sanda, M., Schulz, B. L., Scott, N. E., Sofronov, G., Stadlmann, J., Vakhrushev, S. Y., Woo, C. M., Wu, H.-Y., Yang, P., Ying, W., Zhang, H., Zhang, Y., Zhao, J., Zaia, J., Haslam, S. M., Palmisano, G., Yoo, J. S., Larson, G., Khoo, K.-H., Medzihradszky, K. F., Kolarich, D., Packer, N. H., & Thaysen-Andersen, M. (2021)Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysisNature Methods, 18, 1304–1316doi: 10.1038/s41592-021-01309-x.

Noor, S. I., Hoffmann, M., Rinis, N., Bartels, M. F., Winterhalter, P. R., Hoelscher, C., Hennig, R., Himmelreich, N., Thiel, C., Ruppert, T., Rapp, E., & Strahl, S. (2021)Glycosyltransferase POMGNT1 deficiency strengthens N-cadherin-mediated cell-cell adhesionJournal of Biological Chemistry, 296, 100433doi: 10.1016/j.jbc.2021.100433.

Pralow, A., Hoffmann, M., Nguyen-Khuong, T., Pioch, M., Hennig, R., Genzel, Y., Rapp, E., & Reichl, U. (2021)Comprehensive N‐glycosylation analysis of the influenza A virus proteins HA and NA from adherent and suspension MDCK cellsThe FEBS Journal, 288 (16), 4869–4891doi: 10.1111/febs.15787.

Rexer, T., Wenzel, L., Hoffmann, M., Tischlik, S., Bergmann, C., Grote, V., Boecker, S., Bettenbrock, K., Schildbach, A., Kottler, R., Mahour, R., Rapp, E., Pietzsch, M., & Reichl, U. (2020)Synthesis of lipid-linked oligosaccharides by a compartmentalized multi-enzyme cascade for the in vitro N-glycosylation of peptidesJournal of Biotechnology, 322 (10), 54–65doi: 10.1016/j.jbiotec.2020.07.003.

Heyer, R., Schallert, K., Siewert, C., Kohrs, F., Greve, J., Maus, I., Klang, J., Klocke, M., Heiermann, M., Hoffmann, M., Püttker, S., Calusinska, M., Zoun, R., Saake, G., Benndorf, D., & Reichl, U. (2019)Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plantsMicrobiome, (7), 69doi: 10.1186/s40168-019-0673-y.

Hoffmann, M., Pioch, M., Pralow, A., Hennig, R., Kottler, R., Reichl, U., & Rapp, E. (2018)The Fine Art of Destruction: A Guide to In-Depth Glycoproteomic Analyses – Exploiting the Diagnostic Potential of Fragment IonsProteomics, 18 (24), e1800282doi: 10.1002/pmic.201800282.

Pioch, M., Hoffmann, M., Pralow, A., Reichl, U., & Rapp, E. (2018)GlyXtool^MS: An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry DataAnalytical Chemistry, 90 (20), 11908–11916doi: 10.1021/acs.analchem.8b02087.

Pralow, A., Hoffmann, M., Nguyen-Khuong, T., Rapp, E., & Reichl, U. (2017)Improvement of the glycoproteomic toolbox with the discovery of a unique C-terminal cleavage specificity of flavastacin for N-glycosylated asparagineScientific Reports, 7, 11419doi: 10.1038/s41598-017-11668-1.

Hennig, R., Cajic, S., Borowiak, M., Hoffmann, M., Kottler, R., Reichl, U., & Rapp, E. (2016)Towards personalized diagnostics via longitudinal study of the human plasma N-glycomeBiochimica et Biophysica Acta (BBA) - General Subjects, 1860 (8), 1728–1738doi: 10.1016/j.bbagen.2016.03.035.

Heyer, R., Benndorf, D., Kohrs, F., De Vrieze, J., Boon, N., Hoffmann, M., Rapp, E., Schlüter, A., Sczyrba, A., & Reichl, U. (2016)Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor typeBiotechnology for Biofuels, 9 (9), 155doi: 10.1186/s13068-016-0572-4.

Hoffmann, M., Marx, K., Reichl, U., Wuhrer, M., & Rapp, E. (2016)Site-specific O-Glycosylation Analysis of Human Blood Plasma ProteinsMolecular and Cellular Proteomics, 15 (2), 624–641doi: 10.1074/mcp.M115.053546 .

Kohrs, F., Wolter, S., Benndorf, D., Heyer, R., Hoffmann, M., Rapp, E., Bremges, A., Sczyrba, A., Schlüter, A., & Reichl, U. (2015)Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communitiesProteomics, 15 (20), 3585–3589doi: 10.1002/pmic.201400557.

Muth, T., Behne, A., Heyer, R., Kohrs, F., Benndorf, D., Hoffmann, M., Lehteva, M., Reichl, U., Martens, L., & Rapp, E. (2015)The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and InterpretationJournal of Proteome Research, 14 (3), 1557–1565doi: 10.1021/pr501246w.

Bakovic, M. P., Selman, M. H. J., Hoffmann, M., Rudan, I., Campbell, H., Deelder, A. M., Lauc, G., & Wuhrer, M. (2013)High-Throughput IgG Fc N-Glycosylation Profiling by Mass Spectrometry of GlycopeptidesJournal of Proteome Research, 12 (2), 821–831doi: 10.1021/pr300887z.

Kluge, S., Hoffmann, M., Benndorf, D., Rapp, E., & Reichl, U. (2012)Proteomic tracking and analysis of a bacterial mixed cultureProteomics, 12 (12), 1893–1901doi: 10.1002/pmic.201100362.

Selman, M. H. J., Hoffmann, M., Zauner, G., McDonnell, L. A., Balog, C. I. A., Rapp, E., Deelder, A. M., & Wuhrer, M. (2012)MALDI-TOF-MS analysis of sialylated glycans and glycopeptides using 4-chloro-α-cyanocinnamic acid matrixProteomics, 12 (9), 1337–1348doi: 10.1002/pmic.201100498.

Zauner, G., Hoffmann, M., Rapp, E., Koeleman, C. A. M., Dragan, I., Deelder André M., Wuhrer, M., & Hensbergen, P. J. (2012)Glycoproteomic Analysis of Human Fibrinogen Reveals Novel Regions of O‑GlycosylationJournal of Proteome Research, 11 (12), 5804–5814doi: 10.1021/pr3005937.