Publications of Simon Boecker

Schulz-Mirbach, H., Krüsemann, J. L., Andreadaki, T., Nerlich, J. N., Mavrothalassiti, E., Boecker, S., Schneider, P., Weresow, M., Abdelwahab, O., Paczia, N., Dronsella, B., Erb, T. J., Bar-Even, A., Klamt, S., & Lindner, S. N. (2024)Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modulesNature Communications, 15 (1), 6725 doi: 10.1038/s41467-024-51029-x.

Boecker, S., Schulze, P., & Klamt, S. (2023)Growth-coupled anaerobic production of isobutanol from glucose in minimal medium with Escherichia coliBiotechnology for Biofuels and Bioproducts, 16, 148doi: 10.1186/s13068-023-02395-z .

Wichmann, J., Behrendt, G., Boecker, S., & Klamt, S. (2023)Characterizing and utilizing oxygen-dependent promoters for efficient dynamic metabolic engineeringMetabolic Engineering, 77, 199–207doi: 10.1016/j.ymben.2023.04.006 .

Boecker, S., Espinel-Rios, S., Bettenbrock, K., & Klamt, S. (2022)Enabling anaerobic growth of Escherichia coli on glycerol in defined minimal medium using acetate as redox sinkMetabolic Engineering, 73, 50–57doi: 10.1016/j.ymben.2022.05.006.

Mahour, R., Lee, J. W., Grimpe, P., Boecker, S., Grote, V., Klamt, S., Seidel-Morgenstern, A., Rexer, T., & Reichl, U. (2022)Cell‐free multi‐enzyme synthesis and purification of uridine diphosphate galactoseChemBioChem, 23 (2), e202100361doi: 10.1002/cbic.202100361.

Petras, D., Phelan, V. V., Acharya, D., Allen, A. E., Aron, A. T., Bandeira, N., Bowen, B. P., Belle-Oudry, D., Boecker, S., Cummings, D. A., Deutsch, J. M., Fahy, E., Garg, N., Gregor, R., Handelsman, J., Navarro-Hoyos, M., Jarmusch, A. K., Jarmusch, S. A., Louie, K., Maloney, K. N., Marty, M. T., Meijler, M. M., Mizrahi, I., Neve, R. L., Northen, T. R., Molina-Santiago, C., Panitchpakdi, M., Pullman, B., Puri, A. W., Schmid, R., Subramaniam, S., Thukral, M., Vasquez-Castro, F., Dorrestein, P. C., & Wang, M. (2022)GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browserNature Methods, 19, 134–136doi: 10.1038/s41592-021-01339-5.

Boecker, S., Harder, B.-J., Kutscha, R., Pflügl, S., & Klamt, S. (2021)Increasing ATP turnover boosts productivity of 2,3-butanediol synthesis in Escherichia coliMicrobial Cell Factories, 20, 63doi: 10.1186/s12934-021-01554-x.

Boecker, S., Slaviero, G., Schramm, T., Szymanski, W., Steuer , R., Link, H., & Klamt, S. (2021)Deciphering the physiological response of Escherichia coli under high ATP demandMolecular Systems Biology, 17, e10504doi: 10.15252/msb.202110504.

Rexer, T., Wenzel, L., Hoffmann, M., Tischlik, S., Bergmann, C., Grote, V., Boecker, S., Bettenbrock, K., Schildbach, A., Kottler, R., Mahour, R., Rapp, E., Pietzsch, M., & Reichl, U. (2020)Synthesis of lipid-linked oligosaccharides by a compartmentalized multi-enzyme cascade for the in vitro N-glycosylation of peptidesJournal of Biotechnology, 322 (10), 54–65doi: 10.1016/j.jbiotec.2020.07.003.

Zahoor, A., Messerschmidt, K., Boecker, S., & Klamt, S. (2020)ATPase-based implementation of enforced ATP wasting in Saccharomyces cerevisiae for improved ethanol productionBiotechnology for Biofuels, (13), 185doi: 10.1186/s13068-020-01822-9.

Boecker, S., Zahoor, A., Schramm, T., Link, H., & Klamt, S. (2019)Broadening the Scope of Enforced ATP Wasting as a Tool for Metabolic Engineering in Escherichia coli.Biotechnology Journal, 14 (9), 1800438doi: 10.1002/biot.201800438.

Bauer, J., Boecker, S., & Klamt, S.A toolbox for designing optimal multi-stage processesPresented at: Metabolic Pathway AnalysisSeoul, Korea, July 24, 2023.