Publications of Marcus Pioch

Journal Article (4)

2021
Journal Article
Kawahara, R., Chernykh, A., Alagesan, K., Bern, M., Cao, W., Chalkley, R. J., Cheng, K., Choo, M. S., Edwards, N., Goldman, R., Hoffmann, M., Hu, Y., Huang, Y., Kim, J. Y., Kletter, D., Liquet, B., Liu, M., Mechref, Y., Meng, B., Neelamegham, S., Nguyen-Khuong, T., Nilsson, J., Pap, A., Park, G. W., Parker, B. L., Pegg, C. L., Penninger, J. M., Phung, T. K., Pioch, M., Rapp, E., Sakalli, E., Sanda, M., Schulz, B. L., Scott, N. E., Sofronov, G., Stadlmann, J., Vakhrushev, S. Y., Woo, C. M., Wu, H.-Y., Yang, P., Ying, W., Zhang, H., Zhang, Y., Zhao, J., Zaia, J., Haslam, S. M., Palmisano, G., Yoo, J. S., Larson, G., Khoo, K.-H., Medzihradszky, K. F., Kolarich, D., Packer, N. H., & Thaysen-Andersen, M. (2021)Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysisNature Methods, 18, 1304–1316doi: 10.1038/s41592-021-01309-x.
Journal Article
Pralow, A., Hoffmann, M., Nguyen-Khuong, T., Pioch, M., Hennig, R., Genzel, Y., Rapp, E., & Reichl, U. (2021)Comprehensive N‐glycosylation analysis of the influenza A virus proteins HA and NA from adherent and suspension MDCK cellsThe FEBS Journal, 288 (16), 4869–4891doi: 10.1111/febs.15787.
2018
Journal Article
Hoffmann, M., Pioch, M., Pralow, A., Hennig, R., Kottler, R., Reichl, U., & Rapp, E. (2018)The Fine Art of Destruction: A Guide to In-Depth Glycoproteomic Analyses – Exploiting the Diagnostic Potential of Fragment IonsProteomics, 18 (24), e1800282doi: 10.1002/pmic.201800282.
Journal Article
Pioch, M., Hoffmann, M., Pralow, A., Reichl, U., & Rapp, E. (2018)GlyXtoolMS: An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry DataAnalytical Chemistry, 90 (20), 11908–11916doi: 10.1021/acs.analchem.8b02087.

Talk (4)

2017
Talk
Hoffmann, M., Bartels, M. F., Hennig, R., Pioch, M., Reichl, U., Strahl, S., & Rapp, E.Unravelling the Interplay between Protein O-Mannosylation and N-Glycosylation-An N-Glycomic and N-Glycoproteomic Study of Human N-CadherinPresented at: DFG FOR 2509 Kick-off MeetingHeidleberg, Germany, November 13, 2017.
Talk
Pioch, M., Hoffmann, M., Pralow, A., Nguyen-Khuong, T., Reichl, U., & Rapp, E.glyXtoolMS-Towards Automated Analysis of Glycopeptide Mass Spectrometry DataPresented at: 5th Beilstein Glyco-Bioinformatics SymposiumBerlin, Germany, June 13, 2017.
Talk
Pioch, M., Hoffmann, M., Pralow, A., Reichl, U., & Rapp, E.OpenSource toolbox for semi-automated analysis of glycopeptide mass spectrometry dataPresented at: 5th Beilstein Glyco-Bioinformatics SymposiumBerlin, Germany, June 13, 2017.
Talk
Pralow, A., Nguyen-Khuong, T., Pioch, M., Hennig, R., Hoffmann, M., Rapp, E., & Reichl, U.Structural and site-specific N-glycan analysis of influenza A/PR8/34 virus propagated in adherent and suspension MDCK cellsPresented at: 28th Joint Glycobiology Meeting 2017Aachen, Germany, September 17, 2017.

Poster (6)

2019
Poster
Hoffmann, M., Pioch, M., Pralow, A., Hennig, R., Kottler, R., Reichl, U., & Rapp, E.The Fine Art of Destruction: A Guide to In-Depth Glycoproteomic Analyses - Exploiting the Diagnostic Potential of Fragment IonsPresented at: GlycoBioTec 2019Berlin, Germany, January 28, 2019.
Poster
Pralow, A., Hoffmann, M., Pioch, M., Hennig, R., Nguyen-Khuong, T., Genzel, Y., Rapp, E., & Reichl, U.Comprehensive N-glycosylation analysis of influenza A virus antigens derived from different production cell lines reveal immunogenic glycan epitopesPresented at: GlycoBioTec 2019Berlin, Germany, January 28, 2019.
2018
Poster
Hoffmann, M., Bartels, M. F., Noor, S. I., Hennig, R., Pioch, M., Reichl, U., Strahl, S., & Rapp, E.Unravelling the Interplay between Protein O-Mannosylation and N-Glycosylation - A Glycomic and Glycoproteomic Study of Human N-CadherinPresented at: DFG FOR 2509 MeetingHöchst (Odenwald), Germany, November 15, 2018.
2017
Poster
Hoffmann, M., Bartels, M. F., Hennig, R., Pioch, M., Reichl, U., Strahl, S., & Rapp, E.Unravelling the Interplay between Protein O-Mannosylation and N-Glycosylation-An N-Glycomic and N-Glycoproteomic Study of Human N-CadherinPresented at: DFG FOR 2509 Kick-off MeetingHeidleberg, Germany, November 13, 2017.
Poster
Hoffmann, M., Pioch, M., Pralow, A., Nguyen-Khuong, T., Hennig, R., Kottler, R., Reichl, U., & Rapp, E.Site-Specific N-and O-Glycoproteomic Analysis Using Stepped Collisional Energy Fragmentation on a Linear Iontrap/ Orbitrap Hybrid Mass SpectrometerPresented at: GlycoBioTec Symposium 2017Berlin, Germany, February 7, 2017.
Poster
Pralow, A., Nguyen-Khuong, T., Pioch, M., Hennig, R., Hoffmann, M., Rapp, E., & Reichl, U.Comprehensive structural and site-specific N-glycan analysis of influenza A/PR8/34 virus propagated in adherent and suspension MDCK cellsPresented at: GlycoBioTec Symposium 2017Berlin, Germany, February 7, 2017.

Working Paper (1)

2021
Working Paper
Kawahara, R., Chernykh, A., Alagesan, K., Bern, M., Cao, W., Chalkley, R. J., Cheng, K., Choo, M. S., Edwards, N., Goldman, R., Hoffmann, M., Hu, Y., Huang, Y., Kim, J. Y., Kletter, D., Liquet-Weiland, B., Liu, M., Mechref, Y., Meng, B., Neelamegham, S., Nguyen-Khuong, T., Nilsson, J., Pap, A., Park, G. W., Parker, B. L., Pegg, C. L., Penninger, J. M., Phung, T. K., Pioch, M., Rapp, E., Sakalli, E., Sanda, M., Schulz, B. L., Scott, N. E., Sofronov, G., Stadlmann, J., Vakhrushev, S. Y., Woo, C. M., Wu, H.-Y., Yang, P., Ying, W., Zhang, H., Zhang, Y., Zhao, J., Zaia, J., Haslam, S. M., Palmisano, G., Yoo, J. S., Larson, G., Khoo, K.-H., Medzihradszky , K. F., Kolarich, D., Packer, N. H., & Thaysen-Andersen, M. (2021)Community Evaluation of Glycoproteomics Informatics Solutions Reveals High-Performance Search Strategies of Serum N- and O-Glycopeptide DatabioRxivdoi: 10.1101/2021.03.14.435332 .
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