Publications of Marcus Pioch

Kawahara, R., Chernykh, A., Alagesan, K., Bern, M., Cao, W., Chalkley, R. J., Cheng, K., Choo, M. S., Edwards, N., Goldman, R., Hoffmann, M., Hu, Y., Huang, Y., Kim, J. Y., Kletter, D., Liquet, B., Liu, M., Mechref, Y., Meng, B., Neelamegham, S., Nguyen-Khuong, T., Nilsson, J., Pap, A., Park, G. W., Parker, B. L., Pegg, C. L., Penninger, J. M., Phung, T. K., Pioch, M., Rapp, E., Sakalli, E., Sanda, M., Schulz, B. L., Scott, N. E., Sofronov, G., Stadlmann, J., Vakhrushev, S. Y., Woo, C. M., Wu, H.-Y., Yang, P., Ying, W., Zhang, H., Zhang, Y., Zhao, J., Zaia, J., Haslam, S. M., Palmisano, G., Yoo, J. S., Larson, G., Khoo, K.-H., Medzihradszky, K. F., Kolarich, D., Packer, N. H., & Thaysen-Andersen, M. (2021)Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysisNature Methods, 18, 1304–1316doi: 10.1038/s41592-021-01309-x.

Pralow, A., Hoffmann, M., Nguyen-Khuong, T., Pioch, M., Hennig, R., Genzel, Y., Rapp, E., & Reichl, U. (2021)Comprehensive N‐glycosylation analysis of the influenza A virus proteins HA and NA from adherent and suspension MDCK cellsThe FEBS Journal, 288 (16), 4869–4891doi: 10.1111/febs.15787.

Hoffmann, M., Pioch, M., Pralow, A., Hennig, R., Kottler, R., Reichl, U., & Rapp, E. (2018)The Fine Art of Destruction: A Guide to In-Depth Glycoproteomic Analyses – Exploiting the Diagnostic Potential of Fragment IonsProteomics, 18 (24), e1800282doi: 10.1002/pmic.201800282.

Pioch, M., Hoffmann, M., Pralow, A., Reichl, U., & Rapp, E. (2018)GlyXtool^MS: An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry DataAnalytical Chemistry, 90 (20), 11908–11916doi: 10.1021/acs.analchem.8b02087.

Hoffmann, M., Bartels, M. F., Hennig, R., Pioch, M., Reichl, U., Strahl, S., & Rapp, E.Unravelling the Interplay between Protein O-Mannosylation and N-Glycosylation-An N-Glycomic and N-Glycoproteomic Study of Human N-CadherinPresented at: DFG FOR 2509 Kick-off MeetingHeidleberg, Germany, November 13, 2017.

Pioch, M., Hoffmann, M., Pralow, A., Nguyen-Khuong, T., Reichl, U., & Rapp, E.glyXtool^MS-Towards Automated Analysis of Glycopeptide Mass Spectrometry DataPresented at: 5th Beilstein Glyco-Bioinformatics SymposiumBerlin, Germany, June 13, 2017.

Pioch, M., Hoffmann, M., Pralow, A., Reichl, U., & Rapp, E.OpenSource toolbox for semi-automated analysis of glycopeptide mass spectrometry dataPresented at: 5th Beilstein Glyco-Bioinformatics SymposiumBerlin, Germany, June 13, 2017.

Pralow, A., Nguyen-Khuong, T., Pioch, M., Hennig, R., Hoffmann, M., Rapp, E., & Reichl, U.Structural and site-specific N-glycan analysis of influenza A/PR8/34 virus propagated in adherent and suspension MDCK cellsPresented at: 28th Joint Glycobiology Meeting 2017Aachen, Germany, September 17, 2017.

Hoffmann, M., Pioch, M., Pralow, A., Hennig, R., Kottler, R., Reichl, U., & Rapp, E.The Fine Art of Destruction: A Guide to In-Depth Glycoproteomic Analyses - Exploiting the Diagnostic Potential of Fragment IonsPresented at: GlycoBioTec 2019Berlin, Germany, January 28, 2019.

Pralow, A., Hoffmann, M., Pioch, M., Hennig, R., Nguyen-Khuong, T., Genzel, Y., Rapp, E., & Reichl, U.Comprehensive N-glycosylation analysis of influenza A virus antigens derived from different production cell lines reveal immunogenic glycan epitopesPresented at: GlycoBioTec 2019Berlin, Germany, January 28, 2019.

Hoffmann, M., Bartels, M. F., Noor, S. I., Hennig, R., Pioch, M., Reichl, U., Strahl, S., & Rapp, E.Unravelling the Interplay between Protein O-Mannosylation and N-Glycosylation - A Glycomic and Glycoproteomic Study of Human N-CadherinPresented at: DFG FOR 2509 MeetingHöchst (Odenwald), Germany, November 15, 2018.

Hoffmann, M., Bartels, M. F., Hennig, R., Pioch, M., Reichl, U., Strahl, S., & Rapp, E.Unravelling the Interplay between Protein O-Mannosylation and N-Glycosylation-An N-Glycomic and N-Glycoproteomic Study of Human N-CadherinPresented at: DFG FOR 2509 Kick-off MeetingHeidleberg, Germany, November 13, 2017.

Hoffmann, M., Pioch, M., Pralow, A., Nguyen-Khuong, T., Hennig, R., Kottler, R., Reichl, U., & Rapp, E.Site-Specific N-and O-Glycoproteomic Analysis Using Stepped Collisional Energy Fragmentation on a Linear Iontrap/ Orbitrap Hybrid Mass SpectrometerPresented at: GlycoBioTec Symposium 2017Berlin, Germany, February 7, 2017.

Pralow, A., Nguyen-Khuong, T., Pioch, M., Hennig, R., Hoffmann, M., Rapp, E., & Reichl, U.Comprehensive structural and site-specific N-glycan analysis of influenza A/PR8/34 virus propagated in adherent and suspension MDCK cellsPresented at: GlycoBioTec Symposium 2017Berlin, Germany, February 7, 2017.

Kawahara, R., Chernykh, A., Alagesan, K., Bern, M., Cao, W., Chalkley, R. J., Cheng, K., Choo, M. S., Edwards, N., Goldman, R., Hoffmann, M., Hu, Y., Huang, Y., Kim, J. Y., Kletter, D., Liquet-Weiland, B., Liu, M., Mechref, Y., Meng, B., Neelamegham, S., Nguyen-Khuong, T., Nilsson, J., Pap, A., Park, G. W., Parker, B. L., Pegg, C. L., Penninger, J. M., Phung, T. K., Pioch, M., Rapp, E., Sakalli, E., Sanda, M., Schulz, B. L., Scott, N. E., Sofronov, G., Stadlmann, J., Vakhrushev, S. Y., Woo, C. M., Wu, H.-Y., Yang, P., Ying, W., Zhang, H., Zhang, Y., Zhao, J., Zaia, J., Haslam, S. M., Palmisano, G., Yoo, J. S., Larson, G., Khoo, K.-H., Medzihradszky , K. F., Kolarich, D., Packer, N. H., & Thaysen-Andersen, M. (2021)Community Evaluation of Glycoproteomics Informatics Solutions Reveals High-Performance Search Strategies of Serum N- and O-Glycopeptide DatabioRxivdoi: 10.1101/2021.03.14.435332 .