Publications of Fabian Kohrs

Schütze, A., Benndorf, D., Püttker, S., Kohrs, F., & Bettenbrock, K. (2020)The Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12Frontiers in Microbiology, 11, 233doi: 10.3389/fmicb.2020.00233.

Koch, S., Kohrs, F., Lahmann, P., Bissinger, T., Wendschuh, S., Benndorf, D., Reichl, U., & Klamt, S. (2019)RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestionPLoS Computational Biology, 15 (2), e1006759doi: 10.1371/journal.pcbi.1006759.

Muth, T., Kohrs, F., Heyer, R., Benndorf, D., Rapp, E., Reichl, U., Martens, L., & Renard, B. Y. (2018)MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the GoAnalytical Chemistry, 90, 685–689doi: 10.1021/acs.analchem.7b03544.

Kohrs, F., Heyer, R., Bissinger, T., Kottler, R., Schallert, K., Püttker, S., Behne, A., Rapp, E., Benndorf, D., & Reichl, U. (2017)Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community compositionAnaerobe, 46, 56–68doi: 10.1016/j.anaerobe.2017.02.005.

Heyer, R., Benndorf, D., Kohrs, F., De Vrieze, J., Boon, N., Hoffmann, M., Rapp, E., Schlüter, A., Sczyrba, A., & Reichl, U. (2016)Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor typeBiotechnology for Biofuels, 9 (9), 155doi: 10.1186/s13068-016-0572-4.

Heyer, R., Kohrs, F., Reichl, U., & Benndorf, D. (2015)Metaproteomics of complex microbial communities in biogas plantsMicrobial Biotechnology, 8 (5), 749–763doi: 10.1111/1751-7915.12276.

Muth, T., Behne, A., Heyer, R., Kohrs, F., Benndorf, D., Hoffmann, M., Lehteva, M., Reichl, U., Martens, L., & Rapp, E. (2015)The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and InterpretationJournal of Proteome Research, 14 (3), 1557–1565doi: 10.1021/pr501246w.

Theuerl, S., Kohrs, F., Benndorf, D., Maus, I., Wibberg, D., Schlüter, A., Kausmann, R., Heiermann, M., Rapp, E., Reichl, U., Pühler, A., & Klocke, M. (2015)Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiomeApplied Microbiology and Biotechnology, 99 (18), 7791–7803doi: 10.1007/s00253-015-6627-9.

Kohrs, F., Heyer, R., Magnussen, A., Benndorf, D., Muth, T., Behne, A., Rapp, E., Kausmann, R., Heiermann, M., & Klocke, M. (2014)Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plantsAnaerobe, 29, 59–67doi: 10.1016/j.anaerobe.2013.11.009.

Heyer, R., Kohrs, F., Benndorf, D., Rapp, E., Kausmann, R., Heiermann, M., Klocke, M., & Reichl, U. (2013)Metaproteome analysis of the microbial communities in agricultural biogas plantsNew biotechnology, 30 (6), 614–622doi: 10.1016/j.nbt.2013.01.002.

Heyer, R., Schallert, K., Püttker, S., Kohrs, F., Hellwig, P., Theuerl, S., Schlüter, A., Reichl, U., & Benndorf, D.Identification of process parameters shaping microbial communities in biogas plants using large scale metaproteome analysisPresented at: Annual Conference of the Association for General and Applied Microbiology (VAAM)Mainz, Germany, March 17, 2019.

Benndorf, D., Kohrs, F., Heyer, R., Becher, B., Rapp, E., De Vrieze , J., Schlüter, A., Sczyrba, A., Boon, N., & Reichl, U.High-throughput metaproteomics of biogas plantsPresented at: Symposium on Advances and Applications in MetaproteomicsMagdeburg, Germany, February 8, 2016.

Heyer, R., Benndorf, D., Kohrs, F., De Vrieze, J., Boon, N., Hoffmann, M., Rapp, E., Schlüter, A., Sczyrba, A., & Reichl, U.Proteotyping of biogas plant microbiomesPresented at: Annual Conference of the Association for General and Applied Microbiology (VAAM)Jena, Germany, March 13, 2016.

Kohrs, F., Heyer, R., Benndorf, D., Bissinger, T., Kottler, R., Fronk, K., Rapp, E., & Reichl, U.Kultivierung und Metaproteomanalyse anaerober mikrobieller GemeinschaftenPresented at: 23. SIMBA-TreffenHavelberg, Germany, April 27, 2016.

Benndorf, D., Kohrs, F., Heyer, R., Rapp, E., De Vrieze, J., Boon, N., Schlüter, A., Sczyrba, A., & Reichl, U.An optimized workflow for high-throughput metaproteomics of biogas plantsPresented at: 9th International Symposium on Anaerobic MicrobiologyPortorož, Slovenia, June 25, 2015.

Bensmann, B., Hanke-Rauschenbach, R., Heyer, R., Kohrs, F., Benndorf, D., & Sundmacher, K.Methanation of renewable hydrogen within biogas reactors? A process systems engineering approacPresented at: CHISA 2014Prague, Czech Republic, August 23, 2014.

Heyer, R., Kohrs, F., Benndorf, D., Rapp, E., & Reichl, U.Analysing the microbial population structure and metabolic function by metaproteome analysisPresented at: Biogas Science 2014 (International Conference on Anaerobic Digestion)Wien, Austria, October 26, 2014.

Muth, T., Behne, A., Heyer, R., Kohrs, F., Benndorf, D., Hoffmann, M., Reichl, U., & Martens, L.MetaProteomeAnalyzer – a software suite for the functional and taxonomic characterization of (meta)proteome dataPresented at: 12^th Austrian Proteomic Research SymposiumSalzburg, Austria, September 22, 2014.

Benndorf, D., Kohrs, F., Magnussen, A., Heyer, R., Rapp, E., Kausmann, R., Heierman, M., Klocke, M., & Reichl, U.Metaproteomics for process monitoring of biogas plantsPresented at: 8th International Symposium on Anaerobic Microbiology (ISAM8)Innsbruck, Austria, June 12, 2013.

Benndorf, D., Kuhn, R., Kohrs, F., Schlegel, T., Palese, L. L., Pollice, A., Hanreich, A., Heyer, R., Kausmann, R., Heiermann, M., Klocke, M., Rapp, E., & Reichl, U.Metaproteomics for Process Monitoring in Environmental BiotechnologyPresented at: Annual Conference of the Association for General and Applied Microbiology (VAAM)Bremen, Germany, March 10, 2013.