Publications of Systems Biology (SBI)

Coombs, D.; Straube, R.; Ward, M. J.: Diffusion on a Sphere with Localized Traps: Mean First Passage Time, Eigenvalue Asymptotics, and Fekete Points. SIAM Journal on Applied Mathematics 70 (1), pp. 302 - 332 (2009)

Kremling, A.; Kremling, S.; Bettenbrock, K.: Catabolite repression in Escherichia Coli - a comparison of modelling approaches. FEBS Journal 276 (2), pp. 594 - 602 (2009)

Mirschel, S.; Steinmetz, K.; Rempel, M.; Ginkel, M.; Gilles, E. D.: ProMoT: Modular Modeling for Systems Biology. Bioinformatics 25 (5), pp. 687 - 689 (2009)

Poltz, R.; Franke, R.; Schweitzer, K.; Klamt, S.; Gilles, E. D.; Naumann, M.: Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategies. Advances and Applications in Bioinformatics and Chemistry 2, pp. 125 - 138 (2009)

Samaga, R.; Saez-Rodriguez, J.; Alexopoulos, L. G.; Sorger, P. K.; Klamt, S.: The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data. PLoS Computational Biology 5 (8), e1000438 (2009)

Schenkendorf, R.; Kremling, A.; Mangold, M.: Optimal Experimental Design with the Sigma Point method. IET Systems Biology 3 (1), pp. 10 - 23 (2009)

Schlatter, R.; Conzelmann, H.; Gilles, E. D.; Sawodny, O.; Sauter, T.: Analysis of an apoptotic core model focused on experimental design using artificial data. IET Systems Biology 3 (4), pp. 255 - 265 (2009)

Schlatter, R.; Schmich, K.; Avalos Vizcarra, I.; Scheurich, P.; Sauter, T.; Borner, C.; Ederer, M.; Merfort, I.; Sawodny, O.: ON/OFF and Beyond - A Boolean Model of Apoptosis. PLoS Computational Biology 5 (12), p. e1000595 (2009)

Straube, R.; Ridgway, D.: Investigating the effects of molecular crowding on Ca²⁺ Diffusion using a particle-based simulation model. Chaos 19 (3), 037110 (2009)

Straube, R.; Ward, M. J.: An asymptotic analysis of intracellular signaling gradients arising from multiple small compartments. SIAM Journal on Applied Mathematics 70 (1), pp. 248 - 269 (2009)

Disli, I.; Kremling, A.; Kienle, A.: A Model Based Analysis of Multiple Steady States in Continuos Cell Culturer. In: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, pp. 796 - 804 (Eds. Troch, I.; Breitenecker, F.). Mathmod 2009 - 6th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 11, 2009 - February 13, 2009. (2009)

Mirschel, S.; Steinmetz, K.; Kremling, A.: Two different approaches for modeling biochemical reaction networks with ProMoT. In: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, Vol. 35, pp. 2322 - 2330 (Eds. Troch, I.; Breitenecker, F.). Mathmod 2009 - 6th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 11, 2009 - February 13, 2009. (2009)

Schenkendorf, R.; Kremling, A.; Mangold, M.: Optimal Experimental Design and Model Selection by a Sigma Point Approach. In: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, pp. 2389 - 2395 (Eds. Troch, I.; Breitenecker, F.). Mathmod 2009 - 6th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 11, 2009 - February 13, 2009. (2009)

Koschorreck, M.: Reduced Order Modeling and Analysis of Cellular Signal Transduction. Dissertation, Universität, Stuttgart (2009)

Kremling, A.: Einsatz ingenieurwissenschaftlicher Methoden in der Systembiologie. Habilitation, Otto-von-Guericke-Universität, Magdeburg (2009)

Heldt, S.: A Mathematical Model of Protein Translation and the Competition for Rare Cellular Resources in Response to Amino Acid Starvation. Diploma, Otto-von-Guericke Universität, Magdeburg (2009)

Karschau, J.: Modellgeschützte Optimierung eines CHO-FEDBATCH-PROZESSES zur Antikörperproduktion. Diploma, Otto-von-Guericke Universität, Magdeburg (2009)

Tigges, I.: Additional work on the modelling of the competence related signalling pathway in Streptococcus mutans. Diploma, Otto-von-Guericke Universität, Magdeburg (2009)