Publications of S. Klamt
All genres
Journal Article (117)
2011
Journal Article
Hädicke, O., Grammel, H., & Klamt, S. (2011)Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteriaBMC Systems Biology, 5, 150doi: 10.1186/1752-0509-5-150.
Journal Article
Hädicke, O. & Klamt, S. (2011)Computing complex metabolic intervention strategies using constrained minimal cut setsMetabolic Engineering, 13 (2), 204–213doi: 10.1016/j.ymben.2010.12.004.
Journal Article
Klamt, S. & Kamp von, A. (2011)An application programming interface for CellNetAnalyzerBiosystems, 105 (2), 162–168doi: 10.1016/j.biosystems.2011.02.002.
Journal Article
Ryll, A., Samaga, R., , , & Klamt, S. (2011)Large-scale models of IL-1 and IL-6 signaling and their hepatocellular specificationMolecular BioSystems, 7 (12), 3253–3270doi: 10.1039/c1mb05261f.
2010
Journal Article
, , & Klamt, S. (2010)From Binary to Multivalued to Continuous Models: The Iac Operon as a Case StudyJournal of Integrative Bioinformatics, 7 (1), 151doi: 10.2390/biecoll-jib-2010-151.
Journal Article
Hädicke, O. & Klamt, S. (2010)CASOP: a computational approach for strain optimization aiming at high productivityJournal of Biotechnology, 147 (2), 88–101doi: 10.1016/j.jbiotec.2010.03.006.
Journal Article
Klamt, S., Flassig, R., & Sundmacher, K. (2010)TRANSWESD: inferring cellular networks with transitive reductionBioinformatics, 26 (17), 2160–2168doi: 10.1093/bioinformatics/btq342.
Journal Article
Samaga, R., von Kamp, A., & Klamt, S. (2010)Computing Combinatorial Intervention Strategies and Failure Modes in Signaling NetworksJournal of Computational Biology, 17 (1), 39–53doi: 10.1089/cmb.2009.0121.
2009
Journal Article
Klamt, S., , & (2009)Hypergraphs and cellular networksPLoS Computational Biology, 5 (5), e1000385doi: 10.1371/journal.pcbi.1000385.
Journal Article
Klamt, S. & von Kamp, A. (2009)Computing Paths and Cycles in Biological Interaction GraphsBMC Bioinformatics, 10, 181doi: 10.1186/1471-2105-10-181.
Journal Article
, , , Klamt, S., Gilles, E. D., & (2009)Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategiesAdvances and Applications in Bioinformatics and Chemistry, 2, 125–138doi: 10.2147/AABC.S8211.
Journal Article
Saez-Rodriguez, J., , , Samaga, R., , Klamt, S., & (2009)Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transductionMolecular Systems Biology, 5, 331doi: 10.1038/msb.2009.87.
Journal Article
Samaga, R., Saez-Rodriguez, J., , , & Klamt, S. (2009)The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput dataPLoS Computational Biology, 5 (8), e1000438doi: 10.1371/journal.pcbi.1000438.
2008
Journal Article
, , , Gilles, E. D., Klamt, S., , & (2008)Host-pathogen systems biology: Logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transductionBMC Systems Biology, 2, 4doi: 10.1186/1752-0509-2-4.
Journal Article
, Klamt, S., & (2008)Computing knock-out strategies in metabolic networksJournal of Computational Biology, 15 (3), 259–268doi: 10.1089/cmb.2007.0229.
Journal Article
Klamt, S., Grammel, H., Straube, R., , & Gilles, E. D. (2008)Modeling the electron transport chain of purple non-sulfur bacteriaMolecular Systems Biology, 4, 156doi: 10.1038/msb4100191.
Journal Article
Saez-Rodriguez, J., Hammerle-Fickinger, A., , Klamt, S., Gilles, E. D., & Conradi, C. (2008)Multistability of signal transduction motifsIET Systems Biology, 2 (2), 80–93doi: 10.1049/iet-syb:20070012.
2007
Journal Article
, , , , , , , Klamt, S., , & (2007)GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolismGenome Biology, 8, R89doi: 10.1186/gb-2007-8-5-r89.
Journal Article
Klamt, S., Saez-Rodriguez, J., & Gilles, E. D. (2007)Structural and functional analysis of cellular networks with CellNetAnalyzerBMC Systems Biology, 1, 2doi: 10.1186/1752-0509-1-2.