Publications of Axel Kamp von
All genres
Journal Article (21)
2023
Journal Article
Kamp von, A. & Klamt, S. (2023)Balancing biomass reaction stoichiometry and measured fluxes in flux balance analysisBioinformatics, 39 (10), btad600doi: 10.1093/bioinformatics/btad600.
2022
Journal Article
Klamt, S. & Kamp von, A. (2022)Analyzing and Resolving Infeasibility in Flux Balance Analysis of Metabolic NetworksMetabolites, 12 (7), 585doi: 10.3390/metabo12070585.
Journal Article
Schneider, P., Bekiaris, P. S., Kamp von, A., & Klamt, S. (2022)StrainDesign: a Comprehensive Python Package for Computational Design of Metabolic NetworksBioinformatics, 38 (21), 4981–4983doi: 10.1093/bioinformatics/btac632.
Journal Article
Thiele, S., Kamp von, A., Bekiaris, P. S., Schneider, P., & Klamt, S. (2022)CNApy: a CellNetAnalyzer GUI in Python for Analyzing and Designing Metabolic NetworksBioinformatics, 38 (5), 1467–1469doi: 10.1093/bioinformatics/btab828 .
2020
Journal Article
Kamp von, A. & Klamt, S. (2020)MEMO: A Method for Computing Metabolic Modules for Cell-Free Production SystemsACS Synthetic Biology, 9 (3), 556–566doi: 10.1021/acssynbio.9b00434.
Journal Article
Klamt, S., , & Kamp von, A. (2020)Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networksBMC Bioinformatics, (21), 510doi: 10.1186/s12859-020-03837-3.
Journal Article
Schneider, P., Kamp von, A., & Klamt, S. (2020)An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut setsPLoS Computational Biology, 16 (7), e1008110doi: 10.1371/journal.pcbi.1008110.
2019
Journal Article
Klamt, S., Kamp von, A., & Harder, B.-J. (2019)Computergestütztes Design mikrobieller ZellfabrikenBiospektrum, 25 (2), 156–158doi: 10.1007/s12268-019-1015-0.
2018
Journal Article
Hädicke, O., Kamp von, A., Aydogan, T., & Klamt, S. (2018)OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coliPLoS Computational Biology, 14 (9), e1006492doi: 10.1371/journal.pcbi.1006492.
Journal Article
, Kamp von, A., Klamt, S., & (2018)MoVE identifies metabolic valves to switch between phenotypic statesNature Communications, 9, 5332doi: 10.1038/s41467-018-07719-4.
2017
Journal Article
Kamp von, A. & Klamt, S. (2017)Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms.Nature Communications, 8, 15926 doi: 10.1038/ncomms15956.
Journal Article
Kamp von, A., Thiele, S., Hädicke, O., & Klamt, S. (2017)Use of CellNetAnalyzer in biotechnology and metabolic engineeringJournal of Biotechnology, 261, 221–228doi: 10.1016/j.jbiotec.2017.05.001.
2016
Journal Article
, Kamp von, A., , , , , , , , , , , , , , Klamt, S., , , , & (2016)MUFINS: multi-formalism interaction network simulatornpj Systems Biology and Applications, 2, 16032doi: 10.1038/npjsba.2016.32.
2015
Journal Article
, Kamp von, A., & Klamt, S. (2015)Genome-scale strain designs based on regulatory minimal cut setsBioinformatics, 31 (17), 2844–2851doi: 10.1093/bioinformatics/btv217.
2014
Journal Article
Kamp von, A. & Klamt, S. (2014)Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic NetworksPLoS Computational Biology, 10 (1), e1003378doi: 10.1371/journal.pcbi.1003378.
2013
Journal Article
, , , , , , , , , , , , , , , Kamp von, A., , , , Klamt, S., , , Saez-Rodriguez, J., & (2013)SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formlisms and toolsBMC Systems Biology, 7, 135doi: 10.1186/1752-0509-7-135.
2012
Journal Article
, von Kamp, A., Klamt, S., & (2012)Minimal cut sets in metabolic networks are elementary modes in a dual networkBioinformatics, 28 (3), 381–387doi: 10.1093/bioinformatics/btr674.
2011
Journal Article
Klamt, S. & Kamp von, A. (2011)An application programming interface for CellNetAnalyzerBiosystems, 105 (2), 162–168doi: 10.1016/j.biosystems.2011.02.002.
2010
Journal Article
Samaga, R., von Kamp, A., & Klamt, S. (2010)Computing Combinatorial Intervention Strategies and Failure Modes in Signaling NetworksJournal of Computational Biology, 17 (1), 39–53doi: 10.1089/cmb.2009.0121.
2009
Journal Article
Klamt, S. & von Kamp, A. (2009)Computing Paths and Cycles in Biological Interaction GraphsBMC Bioinformatics, 10, 181doi: 10.1186/1471-2105-10-181.