Publications of Pavlos Stephanos Bekiaris

Bekiaris, P. S. & Klamt, S. (2023)Network-wide thermodynamic constraints shape NAD(P)H cofactor specificity of biochemical reactionsNature Communications, 14, 4660doi: 10.1038/s41467-023-40297-8.

Schneider, P., Bekiaris, P. S., Kamp von, A., & Klamt, S. (2022)StrainDesign: a Comprehensive Python Package for Computational Design of Metabolic NetworksBioinformatics, 38 (21), 4981–4983doi: 10.1093/bioinformatics/btac632.

Thiele, S., Kamp von, A., Bekiaris, P. S., Schneider, P., & Klamt, S. (2022)CNApy: a CellNetAnalyzer GUI in Python for Analyzing and Designing Metabolic NetworksBioinformatics, 38 (5), 1467–1469doi: 10.1093/bioinformatics/btab828 .

Bekiaris, P. S. & Klamt, S. (2021)Designing microbial communities to maximize the thermodynamic driving force for the production of chemicalsPLoS Computational Biology, 17 (6), e1009093doi: 10.1371/journal.pcbi.1009093 .

Bekiaris, P. S. & Klamt, S. (2020)Automatic construction of metabolic models with enzyme constraintsBMC Bioinformatics, 21, 19doi: 10.1186/s12859-019-3329-9.