Publications of Pavlos Stephanos Bekiaris

Kutscha, R., Tomin, T., Birner-Gruenberger, R., Bekiaris, P. S., Klamt, S., & Pflügl, S. (2024)Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demandBiotechnology for Biofuels and Bioproducts, 17, 110doi: 10.1186/s13068-024-02534-0 .

Bekiaris, P. S. & Klamt, S. (2023)Network-wide thermodynamic constraints shape NAD(P)H cofactor specificity of biochemical reactionsNature Communications, 14, 4660doi: 10.1038/s41467-023-40297-8.

Schneider, P., Bekiaris, P. S., Kamp von, A., & Klamt, S. (2022)StrainDesign: a Comprehensive Python Package for Computational Design of Metabolic NetworksBioinformatics, 38 (21), 4981–4983doi: 10.1093/bioinformatics/btac632.

Thiele, S., Kamp von, A., Bekiaris, P. S., Schneider, P., & Klamt, S. (2022)CNApy: a CellNetAnalyzer GUI in Python for Analyzing and Designing Metabolic NetworksBioinformatics, 38 (5), 1467–1469doi: 10.1093/bioinformatics/btab828 .

Bekiaris, P. S. & Klamt, S. (2021)Designing microbial communities to maximize the thermodynamic driving force for the production of chemicalsPLoS Computational Biology, 17 (6), e1009093doi: 10.1371/journal.pcbi.1009093 .

Bekiaris, P. S. & Klamt, S. (2020)Automatic construction of metabolic models with enzyme constraintsBMC Bioinformatics, 21, 19doi: 10.1186/s12859-019-3329-9.

Bekiaris, P. S. (2024)Entwicklung neuer Methoden zur Integration thermodynamischer und enzymatischer Nebenbedingungen in der constraint-basierten metabolischen ModellierungPhD Thesis, Otto-von-Guericke-Universität, Magdeburgdoi: 10.25673/116671.