Publications of Sven Thiele

Thiele, S., Kamp von, A., Bekiaris, P. S., Schneider, P., & Klamt, S. (2022)CNApy: a CellNetAnalyzer GUI in Python for Analyzing and Designing Metabolic NetworksBioinformatics, 38 (5), 1467–1469doi: 10.1093/bioinformatics/btab828 .

Thiele, S., Heise, S., Hessenkemper, W., Bongartz, H., Fensky, M., Schaper, F., & Klamt, S. (2019)Designing optimal experiments to discriminate interaction graph modelsIEEE ACM Transactions on Computational Biology and Bioinformatics, 16 (3), 925–935doi: 10.1109/TCBB.2018.2812184.

Kamp von, A., Thiele, S., Hädicke, O., & Klamt, S. (2017)Use of CellNetAnalyzer in biotechnology and metabolic engineeringJournal of Biotechnology, 261, 221–228doi: 10.1016/j.jbiotec.2017.05.001.

Prigent, S., Frioux, C., Dittami, S. M., Thiele, S., Larhlimi, A., Collet, G., Gutknecht, F., Got, J., Eveillard, D., Bourdon, J., Plewniak, F., Tonon, T., & Siegel, A. (2017)Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic NetworksPLoS Computational Biology, 13, e1005276doi: 10.1371/journal.pcbi.1005276.

Bordron, P., Latorre, M., Cortés, M.-P., González, M., Thiele, S., Siegel, A., Maass, A., & Eveillard, D. (2016)Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approachMicrobiologyOpen, 5 (1), 106–117doi: 10.1002/mbo3.315.

Thiele, S., Cerone, L., Saez-Rodriguez, J., Siegel, A., Guciolowski, C., & Klamt, S. (2015)Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies.BMC Bioinformatics, 16 (1), 345doi: 10.1186/s12859-015-0733-7.

Prigent, S., Collet, G., Dittami, S. M., Delage, L., Ethis de Corny, F., Dameron, O., Eveillard, D., Thiele, S., Cambefort, J., Siegel, A., & Tonon, T. (2014)The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyondThe Plant Journal, 80 (2), 367–381doi: 10.1111/tpj.12627.