Publications of Regina Samaga

D`Allessandro, L. A., Samaga, R., Maiwald, T., Rho, S.-H., Bonefas, S., Raue, A., Iwamoto, N., Kienast, A., Waldow, K., Meyer, R., Schilling, M., Timmer, J., Klamt, S., & Klingmüller, U. (2015)Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative ModelingPLoS Computational Biology, 11 (4), e1004192doi: 10.1371/journal.pcbi.1004192.

Melas, I. N., Samaga, R., Alexopoulos, L. G., & Klamt, S. (2013)Detecting and Removing Inconsistencies between Experimental Data and Signaling Network Topologies Using Integer Linear Programming on Interaction GraphsPLoS Computational Biology, 9 (9), e1003204doi: 10.1371/journal.pcbi.1003204.

Samaga, R. & Klamt, S. (2013)Modeling approaches for qualitative and semi-quantitative analysis of cellular signaling networksCell Communication and Signaling, 11 (1), 43doi: 10.1186/1478-811X-11-43.

Kolczyk, K., Samaga, R., Conzelmann, H., Mirschel, S., & Conradi, C. (2012)The Process-Interaction-Model: a common representation of rule-based and logical models allows studying signal transduction on different levels of detailBMC Bioinformatics, 13, 251doi: 10.1186/1471-2105-13-251.

Ryll, A., Samaga, R., Schaper, F., Alexopoulos, L. G., & Klamt, S. (2011)Large-scale models of IL-1 and IL-6 signaling and their hepatocellular specificationMolecular BioSystems, 7 (12), 3253–3270doi: 10.1039/c1mb05261f.

Samaga, R., von Kamp, A., & Klamt, S. (2010)Computing Combinatorial Intervention Strategies and Failure Modes in Signaling NetworksJournal of Computational Biology, 17 (1), 39–53doi: 10.1089/cmb.2009.0121.

Saez-Rodriguez, J., Alexopoulos, L. G., Epperlein, J., Samaga, R., Lauffenburger, D. A., Klamt, S., & Sorger, P. K. (2009)Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transductionMolecular Systems Biology, 5, 331doi: 10.1038/msb.2009.87.

Samaga, R., Saez-Rodriguez, J., Alexopoulos, L. G., Sorger, P. K., & Klamt, S. (2009)The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput dataPLoS Computational Biology, 5 (8), e1000438doi: 10.1371/journal.pcbi.1000438.

Steinmetz, K., Samaga, R., Ginkel, M., & Gilles, E. D.User support in visual editing for signaling and regulatory networks in ProMoTPresented at: Conference on Systems Biology of Mammalian Cells (SBMC08)Dresden, Germany, May 22, 2008.

Samaga, R. (2018)Qualitative and Semi-Quantitative Analysis of Signal Transduction NetworksPhD Thesis, Shaker Verlag, Aachen.