Publications of Ernst D. Gilles
All genres
Journal Article (181)
2012
Journal Article
Huard, J., , Gilles, E. D., , & Klamt, S. (2012)An integrative model links multiple inputs and signaling pathways to the onset of DNA synthesis in hepatocytesFEBS Journal, 279 (18), 3290–3313doi: 10.1111/j.1742-4658.2012.08572.x.
2011
Journal Article
, Gilles, E. D., & (2011)The Glansdorff-Prigogine stability criterion for biochemical reaction networksAutomatica, 47 (6), 1097–1104doi: 10.1016/j.automatica.2011.01.072.
2009
Journal Article
Mirschel, S., Steinmetz, K., Rempel, M., , & Gilles, E. D. (2009)ProMoT: Modular Modeling for Systems BiologyBioinformatics, 25 (5), 687–689doi: 10.1093/bioinformatics/btp029.
Journal Article
, , , Klamt, S., Gilles, E. D., & (2009)Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategiesAdvances and Applications in Bioinformatics and Chemistry, 2, 125–138doi: 10.2147/AABC.S8211.
Journal Article
, Conzelmann, H., Gilles, E. D., , & Sauter, T. (2009)Analysis of an apoptotic core model focused on experimental design using artificial dataIET Systems Biology, 3 (4), 255–265doi: 10.1049/iet-syb.2008.0138.
2008
Journal Article
Conzelmann, H., , & Gilles, E. D. (2008)Exact model reduction of combinatorial reaction networksBMC Systems Biology, 2, 78doi: 10.1186/1752-0509-2-78.
Journal Article
Ederer, M. & Gilles, E. D. (2008)Thermodynamic Constraints in Kinetic Modeling: Thermodynamic-Kinetic Modeling in Comparison to Other ApproachesEngineering in Life Sciences, 8 (5), 467–476doi: 10.1002/elsc.200800040.
Journal Article
, Ederer, M., Gilles, E. D., , , & (2008)Analyse der evolutiven Adaptation am Beispiel einer pyruvat-auxotrophen Escherichia coli-Mutanteat - Automatisierungstechnik, 56 (5), 257–268doi: 10.1524/auto.2008.0704.
Journal Article
, , , Gilles, E. D., Klamt, S., , & (2008)Host-pathogen systems biology: Logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transductionBMC Systems Biology, 2, 4doi: 10.1186/1752-0509-2-4.
Journal Article
Klamt, S., Grammel, H., Straube, R., , & Gilles, E. D. (2008)Modeling the electron transport chain of purple non-sulfur bacteriaMolecular Systems Biology, 4, 156doi: 10.1038/msb4100191.
Journal Article
Koschorreck, M. & Gilles, E. D. (2008)Mathematical modeling and analysis of insulin clearance in vivoBMC Systems Biology, 2, 43doi: 10.1186/1752-0509-2-43.
Journal Article
Koschorreck, M. & Gilles, E. D. (2008)ALC: automated reduction of rule-based modelsBMC Systems Biology, 2, 91doi: 10.1186/1752-0509-2-91.
Journal Article
Kremling, A., Bettenbrock, K., & Gilles, E. D. (2008)A feed-forward loop guarantees robust behavior in Echerichia coli carbohydrate uptakeBioinformatics, 24, 704–710doi: 10.1093/bioinformatics/btn010.
Journal Article
, , & Gilles, E. D. (2008)State estimation in batch crystallization using reduced population modelsJournal of Process Control, 18 (3-4), 361–374doi: 10.1016/j.jprocont.2007.10.010.
Journal Article
Saez-Rodriguez, J., Gayer, S., Ginkel, M., & Gilles, E. D. (2008)Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modulesBioinformatics, 24 (16), i213–i219doi: 10.1093/bioinformatics/btn289.
Journal Article
Saez-Rodriguez, J., Hammerle-Fickinger, A., , Klamt, S., Gilles, E. D., & Conradi, C. (2008)Multistability of signal transduction motifsIET Systems Biology, 2 (2), 80–93doi: 10.1049/iet-syb:20070012.
Journal Article
, , , Saez-Rodriguez, J., , Gilles, E. D., , & (2008)Dynamics of proximal signaling events after TCR/CD8-mediated induction of proliferation or apoptosis in mature CD8+ T cellsJournal of Immunology, 180 (10), 6703–6712doi: 10.4049/jimmunol.180.10.6703.
2007
Journal Article
Bettenbrock, K., Sauter, T., , Kremling, A., , & Gilles, E. D. (2007)Correlation between growth rates, EIIACrr phosphorylation, and intracellular cAMP levels in Escherichia coli K-12Journal of Bacteriology, 189 (19), 6891–6900doi: 10.1128/JB.00819-07.
Journal Article
Ederer, M. & Gilles, E. D. (2007)Thermodynamically feasible kinetic models of reaction networksBiophysical Journal, 92 (6), 1846–1857doi: 10.1529/biophysj.106.094094.
Journal Article
Klamt, S., Saez-Rodriguez, J., & Gilles, E. D. (2007)Structural and functional analysis of cellular networks with CellNetAnalyzerBMC Systems Biology, 1, 2doi: 10.1186/1752-0509-1-2.