Publications of Sebastian Mirschel

Journal Article (3)

2012
Journal Article
Kolczyk, K., Samaga, R., Conzelmann, H., Mirschel, S., & Conradi, C. (2012)The Process-Interaction-Model: a common representation of rule-based and logical models allows studying signal transduction on different levels of detailBMC Bioinformatics, 13, 251doi: 10.1186/1471-2105-13-251.
2009
Journal Article
Mirschel, S., Steinmetz, K., Rempel, M., Ginkel, M., & Gilles, E. D. (2009)ProMoT: Modular Modeling for Systems BiologyBioinformatics, 25 (5), 687–689doi: 10.1093/bioinformatics/btp029.
2006
Journal Article
Saez-Rodriguez, J., Mirschel, S., Hemenway, R., Klamt, S., Gilles, E. D., & Ginkel, M. (2006)Visual set-up of logical models of signaling and regulatory networks with ProMoTBMC Bioinformatics, 7, 506doi: 10.1186/1471-2105-7-506.

Conference Paper (1)

2009
Conference Paper
Mirschel, S., Steinmetz, K., & Kremling, A. (2009)Two different approaches for modeling biochemical reaction networks with ProMoTIn: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, 2322–2330.

Talk (1)

2009
Talk
Mirschel, S.Visualization of complex biochemical models with ProMoTPresented at: Waterman Seminar Series on BioinformaticsGatersleben, Germany, August 12, 2009.

Poster (9)

2009
Poster
Kolczyk, K., Mirschel, S., Rempel, M., & Gilles, E. D.Modular Modeling with ProMoT in Systems BiologyPresented at: German Conference on BioinformaticsHalle (Saale), Germany, September 28, 2009.
Poster
Mirschel, S., Steinmetz, K., Rempel, M., & Gilles, E. D.Modular modeling with ProMoTPresented at: German Symposium On Systems Biology 2009Heidelberg, Germany, May 12, 2009.
Poster
Rempel, M., Mirschel, S., Steinmetz, K., & Gilles, E. D.Model Integration of Modular Models using PromotPresented at: German Symposium on Systems Biology 2009Heidelberg, May 12, 2009.
2008
Poster
Mirschel, S., Saez-Rodriguez, J., Ginkel, M., & Gilles, E. D.Visual support for structural and functional analysis of complex signaling networks in ProMoTPresented at: 9th International Conference on Systems Biology (ICSB08)Gothenburg, Sweden, August 23, 2008.
Poster
Mirschel, S., Saez-Rodriguez, J., Ginkel, M., & Gilles, E. D.Visual Support for the Structural Analysis of Complex Signaling Networks in ProMoTPresented at: Conference on Systems Biology of Mammalian Cells (SBMC08)Dresden, Germany, May 22, 2008.
Poster
Steinmetz, K., Mirschel, S., Rempel, M., Ginkel, M., & Gilles, E. D.Structured and modular modeling with ProMoTPresented at: 1st FORSYS SymposiumBerlin, Germany, June 19, 2008.
2006
Poster
Mirschel, S., Ginkel, M., Saez-Rodriguez, J., & Gilles, E. D.Interactive visualization of complex and structured biological networksPresented at: 7th International Conference on Systems Biology (ICSB06)Yokohama, Japan, October 9, 2006.
Poster
Mirschel, S., Ginkel, M., Saez-Rodriguez, J., & Gilles, E. D.Visualization of complex signaling pathwaysPresented at: 1st Conference on Systems Biology of Mammalian Cells (SBMC06)Heidelberg, Germany, July 12, 2006.
2005
Poster
Mirschel, S., Ginkel, M., Saez-Rodriguez, J., & Gilles, E. D.Adaptive visualization of complex hierarchical signaling networksPresented at: 4th European Conference On Computational Biology (ECCB05)Madrid, Spain, September 28, 2005.

Thesis - PhD (1)

2012
Thesis - PhD
Mirschel, S. (2012)Interactive Visualization of Complex Structures in Modular Models for Systems BiologyPhD Thesis, Shaker, Aachen.
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