Publications of Steffen Klamt
All genres
Journal Article (111)
2024
Journal Article
Espinel-Rios, S., , , Bettenbrock, K., Klamt, S., & (2024)Toward a modeling, optimization, and predictive control framework for fed-batch metabolic cybergeneticsBiotechnology and Bioengineering, 121 (1), 366–379doi: 10.1002/bit.28575.
Journal Article
Huber, N., Alcalá Orozco, E. A., Rexer, T., Reichl, U., & Klamt, S. (2024)Model-based optimization of cell-free enzyme cascades exemplified for the production of GDP-fucoseMetabolic Engineering, 81, 10–25doi: 10.1016/j.ymben.2023.10.007.
2023
Journal Article
Alcalá Orozco, E. A., Grote, V., , Klamt, S., Reichl, U., & Rexer, T. (2023)A Cell‐Free Multi‐enzyme Cascade Reaction for the Synthesis of CDP‐GlycerolChemBioChem: A European Journal of Chemical Biology, 24 (21), e202300463doi: 10.1002/cbic.202300463.
Journal Article
Bekiaris, P. S. & Klamt, S. (2023)Network-wide thermodynamic constraints shape NAD(P)H cofactor specificity of biochemical reactionsNature Communications, 14, 4660doi: 10.1038/s41467-023-40297-8.
Journal Article
Boecker, S., Schulze, P., & Klamt, S. (2023)Growth-coupled anaerobic production of isobutanol from glucose in minimal medium with Escherichia coliBiotechnology for Biofuels and Bioproducts, 16, 148doi: 10.1186/s13068-023-02395-z .
Journal Article
Kamp von, A. & Klamt, S. (2023)Balancing biomass reaction stoichiometry and measured fluxes in flux balance analysisBioinformatics, 39 (10), btad600doi: 10.1093/bioinformatics/btad600.
Journal Article
Wichmann, J., Behrendt, G., Boecker, S., & Klamt, S. (2023)Characterizing and utilizing oxygen-dependent promoters for efficient dynamic metabolic engineeringMetabolic Engineering, 77, 199–207doi: 10.1016/j.ymben.2023.04.006 .
2022
Journal Article
Behrendt, G., Frohwitter, J., Vlachonikolou, M., Klamt, S., & Bettenbrock, K. (2022)Zymo-Parts: A Golden Gate Modular Cloning Toolbox for Heterologous Gene Expression in Zymomonas mobilisACS Synthetic Biology, 11 (11), 3855–3864doi: 10.1021/acssynbio.2c00428.
Journal Article
Boecker, S., Espinel-Rios, S., Bettenbrock, K., & Klamt, S. (2022)Enabling anaerobic growth of Escherichia coli on glycerol in defined minimal medium using acetate as redox sinkMetabolic Engineering, 73, 50–57doi: 10.1016/j.ymben.2022.05.006.
Journal Article
Espinel-Rios, S., Bettenbrock, K., Klamt, S., & (2022)Maximizing batch fermentation efficiency by constrained model-based optimization and predictive control of adenosine triphosphate turnoverAIChE-Journal, 68 (4), e17555doi: 10.1002/aic.17555.
Journal Article
Klamt, S. & Kamp von, A. (2022)Analyzing and Resolving Infeasibility in Flux Balance Analysis of Metabolic NetworksMetabolites, 12 (7), 585doi: 10.3390/metabo12070585.
Journal Article
Mahour, R., Lee, J. W., Grimpe, P., Boecker, S., Grote, V., Klamt, S., Seidel-Morgenstern, A., Rexer, T., & Reichl, U. (2022)Cell‐free multi‐enzyme synthesis and purification of uridine diphosphate galactoseChemBioChem, 23 (2), e202100361doi: 10.1002/cbic.202100361.
Journal Article
Schneider, P., Bekiaris, P. S., Kamp von, A., & Klamt, S. (2022)StrainDesign: a Comprehensive Python Package for Computational Design of Metabolic NetworksBioinformatics, 38 (21), 4981–4983doi: 10.1093/bioinformatics/btac632.
Journal Article
Thiele, S., Kamp von, A., Bekiaris, P. S., Schneider, P., & Klamt, S. (2022)CNApy: a CellNetAnalyzer GUI in Python for Analyzing and Designing Metabolic NetworksBioinformatics, 38 (5), 1467–1469doi: 10.1093/bioinformatics/btab828 .
2021
Journal Article
Bekiaris, P. S. & Klamt, S. (2021)Designing microbial communities to maximize the thermodynamic driving force for the production of chemicalsPLoS Computational Biology, 17 (6), e1009093doi: 10.1371/journal.pcbi.1009093 .
Journal Article
Boecker, S., Harder, B.-J., , , & Klamt, S. (2021)Increasing ATP turnover boosts productivity of 2,3-butanediol synthesis in Escherichia coliMicrobial Cell Factories, 20, 63doi: 10.1186/s12934-021-01554-x.
Journal Article
Boecker, S., Slaviero, G., , , , , & Klamt, S. (2021)Deciphering the physiological response of Escherichia coli under high ATP demandMolecular Systems Biology, 17, e10504doi: 10.15252/msb.202110504.
Journal Article
, , , , Klamt, S., & (2021)Blending industrial blast furnace gas with H 2 enables Acetobacterium woodii to efficiently co-utilize CO, CO2 and H2Bioresource Technology, 323, 124573doi: 10.1016/j.biortech.2020.124573.
Journal Article
Schneider, P., , & Klamt, S. (2021)Systematizing the different notions of growth-coupled product synthesis and a single framework for computing corresponding strain designsBiotechnology Journal, 16, 2100236doi: 10.1002/biot.202100236.