Publications of Dirk Benndorf

Heyer, R., Benndorf, D., Kohrs, F., De Vrieze, J., Boon, N., Hoffmann, M., Rapp, E., Schlüter, A., Sczyrba, A., & Reichl, U. (2016)Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor typeBiotechnology for Biofuels, 9 (9), 155doi: 10.1186/s13068-016-0572-4.

Salerno, C., Benndorf, D., Kluge, S., Palese, L. L., Reichl, U., & Pollice, A. (2016)Metaproteomics Applied to Activated Sludge for Industrial Wastewater Treatment Revealed a Dominant Methylotrophic Metabolism of Hyphomicrobium zavarziniiMicrobial Ecology, 72 (1), 9–13doi: 10.1007/s00248-016-0769-x.

Heyer, R., Kohrs, F., Reichl, U., & Benndorf, D. (2015)Metaproteomics of complex microbial communities in biogas plantsMicrobial Biotechnology, 8 (5), 749–763doi: 10.1111/1751-7915.12276.

Kluge, S., Benndorf, D., Genzel, Y., Scharfenberg, K., Rapp, E., & Reichl, U. (2015)Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspensionVaccine, 33 (35), 4269–4280doi: 10.1016/j.vaccine.2015.02.077.

Muth, T., Behne, A., Heyer, R., Kohrs, F., Benndorf, D., Hoffmann, M., Lehteva, M., Reichl, U., Martens, L., & Rapp, E. (2015)The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and InterpretationJournal of Proteome Research, 14 (3), 1557–1565doi: 10.1021/pr501246w.

Theuerl, S., Kohrs, F., Benndorf, D., Maus, I., Wibberg, D., Schlüter, A., Kausmann, R., Heiermann, M., Rapp, E., Reichl, U., Pühler, A., & Klocke, M. (2015)Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiomeApplied Microbiology and Biotechnology, 99 (18), 7791–7803doi: 10.1007/s00253-015-6627-9.

Benndorf, D. & Reichl, U. (2014)Proteomics in environmental and technical microbiologyEngineering in Life Sciences, 14 (1), 27–46doi: 10.1002/elsc.201200205.

Kohrs, F., Heyer, R., Magnussen, A., Benndorf, D., Muth, T., Behne, A., Rapp, E., Kausmann, R., Heiermann, M., & Klocke, M. (2014)Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plantsAnaerobe, 29, 59–67doi: 10.1016/j.anaerobe.2013.11.009.

Hanreich, A., Schimpf, U., Zakrzewski, M., Schlüter, A., Benndorf, D., Heyer, R., Rapp, E., Puhler, A., Reichl, U., & Klocke, M. (2013)Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradationSystematic and Applied Microbiology, 36 (5), 330–338doi: 10.1016/j.syapm.2013.03.006.

Heyer, R., Kohrs, F., Benndorf, D., Rapp, E., Kausmann, R., Heiermann, M., Klocke, M., & Reichl, U. (2013)Metaproteome analysis of the microbial communities in agricultural biogas plantsNew biotechnology, 30 (6), 614–622doi: 10.1016/j.nbt.2013.01.002.

Kluge, S., Rourou, S., Vester, D., Majoul, S., Benndorf, D., Genzel, Y., Rapp, E., Kallel, H., & Reichl, U. (2013)Proteome analysis of virus-host cell interaction: rabies virus replication in Vero cells in two different mediaApplied Microbiology and Biotechnology, 97 (12), 5493–5506doi: 10.1007/s00253-013-4939-1.

Muth, T., Benndorf, D., Reichl, U., Rapp, E., & Martens, L. (2013)Searching for a needle in a stack of needles: challenges in metaproteomics data analysis.Molecular BioSystems, 9 (4), 578–585doi: 10.1039/c2mb25415h.

Hanreich, A., Heyer, R., Benndorf, D., Rapp, E., Pioch, M., Reichl, U., & Klocke, M. (2012)Metaproteome analysis to determine the metabolically active part of thermophilic microbial community producing biogas from agricultural biomassCanadian Journal of Microbiology, 58 (7), 917–922doi: 10.1139/W2012-058.

Kluge, S., Hoffmann, M., Benndorf, D., Rapp, E., & Reichl, U. (2012)Proteomic tracking and analysis of a bacterial mixed cultureProteomics, 12 (12), 1893–1901doi: 10.1002/pmic.201100362.

Kolvenbach, B. A., Lenz, M., Benndorf, D., Rapp, E., Fousek, J., Vlcek, C., Schäffer, A., Gabriel, F. L. P., Kohler, H.-P. E., & Corvini, P. F. X. (2011)Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3AMB Express, 1, 8doi: 10.1186/2191-0855-1-8.

Kuhn, R., Benndorf, D., Rapp, E., Reichl, U., Palese, L., & Pollice, A. (2011)Metaproteome analysis of sewage sludge from membrane bioreactorsProteomics, 11 (13), 2738–2744doi: 10.1002/pmic.201000590.

Benndorf, D., Jach, M., Klamt, S., & Reichl, U. (2010)Systembiologie-Ausbildung von Anfang anSystembiologie.de, (2), 82–84.

Roma-Rodriguesa, C., Santosa, P., Benndorf, D., Rapp, E., & Sá-Correiaa, I. (2010)Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteomeProteomics, 73 (8), 1461–1478doi: 10.1016/j.jprot.2010.02.003.

Zoun, R., Schallert, K., Broneske, D., Trifonova, I., Chen, X., Heyer, R., Benndorf, D., & Saake, G. (2019)Efficient transformation of protein sequence databases to columnar index schemaIn: Database and Expert Systems Applications. DEXA 2019, 67–72doi: 10.1007/978-3-030-27684-3_10.

Zoun, R., Campero Durand, G., Schallert , K., Patrikar, A., Broneske, D., Fenske, W., Heyer, R., Benndorf, D., & Saake, G. (2018)Protein Identification as a Suitable Application for Fast Data ArchitectureIn: Database and Expert Systems Applications: DEXA 2018 International Workshops BDMICS, BIOKDD, and TIR, 168–178doi: 10.1007/978-3-319-99133-7_14.