Publications of Dirk Benndorf
All genres
Journal Article (58)
2016
Journal Article
Heyer, R., Benndorf, D., Kohrs, F., , , Hoffmann, M., Rapp, E., , , & Reichl, U. (2016)Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor typeBiotechnology for Biofuels, 9 (9), 155doi: 10.1186/s13068-016-0572-4.
Journal Article
Benndorf, D., Kluge, S., , Reichl, U., & (2016)Metaproteomics Applied to Activated Sludge for Industrial Wastewater Treatment Revealed a Dominant Methylotrophic Metabolism of Hyphomicrobium zavarziniiMicrobial Ecology, 72 (1), 9–13doi: 10.1007/s00248-016-0769-x.
, 2015
Journal Article
Heyer, R., Kohrs, F., Reichl, U., & Benndorf, D. (2015)Metaproteomics of complex microbial communities in biogas plantsMicrobial Biotechnology, 8 (5), 749–763doi: 10.1111/1751-7915.12276.
Journal Article
Kluge, S., Benndorf, D., Genzel, Y., , Rapp, E., & Reichl, U. (2015)Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspensionVaccine, 33 (35), 4269–4280doi: 10.1016/j.vaccine.2015.02.077.
Journal Article
Muth, T., Behne, A., Heyer, R., Kohrs, F., Benndorf, D., Hoffmann, M., , Reichl, U., , & Rapp, E. (2015)The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and InterpretationJournal of Proteome Research, 14 (3), 1557–1565doi: 10.1021/pr501246w.
Journal Article
Kohrs, F., Benndorf, D., , , , , , Rapp, E., Reichl, U., , & (2015)Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiomeApplied Microbiology and Biotechnology, 99 (18), 7791–7803doi: 10.1007/s00253-015-6627-9.
, 2014
Journal Article
Benndorf, D. & Reichl, U. (2014)Proteomics in environmental and technical microbiologyEngineering in Life Sciences, 14 (1), 27–46doi: 10.1002/elsc.201200205.
Journal Article
2013
Journal Article
Benndorf, D., Heyer, R., Rapp, E., , Reichl, U., & (2013)Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradationSystematic and Applied Microbiology, 36 (5), 330–338doi: 10.1016/j.syapm.2013.03.006.
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Journal Article
Heyer, R., Kohrs, F., Benndorf, D., Rapp, E., , , , & Reichl, U. (2013)Metaproteome analysis of the microbial communities in agricultural biogas plantsNew biotechnology, 30 (6), 614–622doi: 10.1016/j.nbt.2013.01.002.
Journal Article
Kluge, S., , Vester, D., , Benndorf, D., Genzel, Y., Rapp, E., , & Reichl, U. (2013)Proteome analysis of virus-host cell interaction: rabies virus replication in Vero cells in two different mediaApplied Microbiology and Biotechnology, 97 (12), 5493–5506doi: 10.1007/s00253-013-4939-1.
Journal Article
Muth, T., Benndorf, D., Reichl, U., Rapp, E., & (2013)Searching for a needle in a stack of needles: challenges in metaproteomics data analysis.Molecular BioSystems, 9 (4), 578–585doi: 10.1039/c2mb25415h.
2012
Journal Article
Heyer, R., Benndorf, D., Rapp, E., , Reichl, U., & (2012)Metaproteome analysis to determine the metabolically active part of thermophilic microbial community producing biogas from agricultural biomassCanadian Journal of Microbiology, 58 (7), 917–922doi: 10.1139/W2012-058.
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Journal Article
Kluge, S., Hoffmann, M., Benndorf, D., Rapp, E., & Reichl, U. (2012)Proteomic tracking and analysis of a bacterial mixed cultureProteomics, 12 (12), 1893–1901doi: 10.1002/pmic.201100362.
2011
Journal Article
Benndorf, D., Rapp, E., , , , , , & (2011)Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3AMB Express, 1, 8doi: 10.1186/2191-0855-1-8.
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Journal Article
Benndorf, D., Rapp, E., Reichl, U., , & (2011)Metaproteome analysis of sewage sludge from membrane bioreactorsProteomics, 11 (13), 2738–2744doi: 10.1002/pmic.201000590.
, 2010
Journal Article
Benndorf, D., , , & Reichl, U. (2010)Systembiologie-Ausbildung von Anfang anSystembiologie.de, (2), 82–84.
Journal Article
Benndorf, D., Rapp, E., & (2010)Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteomeProteomics, 73 (8), 1461–1478doi: 10.1016/j.jprot.2010.02.003.
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2019
Conference Paper
Benndorf, D., & (2019)Efficient transformation of protein sequence databases to columnar index schemaIn: Database and Expert Systems Applications. DEXA 2019, 67–72doi: 10.1007/978-3-030-27684-3_10.
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Conference Paper
Benndorf, D., & (2018)Protein Identification as a Suitable Application for Fast Data ArchitectureIn: Database and Expert Systems Applications: DEXA 2018 International Workshops BDMICS, BIOKDD, and TIR, 168–178doi: 10.1007/978-3-319-99133-7_14.
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