Max Planck Institute for Dynamics of Complex Technical Systems

Publications of Dirk Benndorf

All genres

Journal Article (62)

2018

Journal Article

Wenzel, L., Heyer, R., Schallert, K., Löser, L., Wünschiers, R., Reichl, U., & Benndorf, D. (2018)SDS-PAGE fractionation to increase metaproteomic insight into the taxonomic and functional composition of microbial communities for biogas plant samplesEngineering in Life Sciences, 18 (7), 498–509doi: 10.1002/elsc.201800062.

MPG.PuRe

2017

Journal Article

Heyer, R., Schallert, K., Zoun, R., Becher, B., Saake, G., & Benndorf, D. (2017)Challenges and perspectives of metaproteomic data analysisJournal of Biotechnology, 261, 24–36doi: 10.1016/j.jbiotec.2017.06.1201.

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Journal Article

Kohrs, F., Heyer, R., Bissinger, T., Kottler, R., Schallert, K., Püttker, S., Behne, A., Rapp, E., Benndorf, D., & Reichl, U. (2017)Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community compositionAnaerobe, 46, 56–68doi: 10.1016/j.anaerobe.2017.02.005.

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Journal Article

Ricken, B., Kolvenbach, B. A., Bergesch, C., Benndorf, D., Kroll, K., Strnad, H., Vlcek, C., Adaixo, R., Hammes, F., Shahgaldian, P., Schäffer, A., Kohler, H.-P. E., & Corvini , P. F.-X. (2017)FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibioticsScientific Reports, 7, 15783doi: 10.1038/s41598-017-16132-8.

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publisher-version

2016

Journal Article

Heyer, R., Benndorf, D., Kohrs, F., De Vrieze, J., Boon, N., Hoffmann, M., Rapp, E., Schlüter, A., Sczyrba, A., & Reichl, U. (2016)Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor typeBiotechnology for Biofuels, 9 (9), 155doi: 10.1186/s13068-016-0572-4.

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publisher-version

Journal Article

Salerno, C., Benndorf, D., Kluge, S., Palese, L. L., Reichl, U., & Pollice, A. (2016)Metaproteomics Applied to Activated Sludge for Industrial Wastewater Treatment Revealed a Dominant Methylotrophic Metabolism of Hyphomicrobium zavarziniiMicrobial Ecology, 72 (1), 9–13doi: 10.1007/s00248-016-0769-x.

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2015

Journal Article

Heyer, R., Kohrs, F., Reichl, U., & Benndorf, D. (2015)Metaproteomics of complex microbial communities in biogas plantsMicrobial Biotechnology, 8 (5), 749–763doi: 10.1111/1751-7915.12276.

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publisher-version

Journal Article

Kluge, S., Benndorf, D., Genzel, Y., Scharfenberg, K., Rapp, E., & Reichl, U. (2015)Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspensionVaccine, 33 (35), 4269–4280doi: 10.1016/j.vaccine.2015.02.077.

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Journal Article

Muth, T., Behne, A., Heyer, R., Kohrs, F., Benndorf, D., Hoffmann, M., Lehteva, M., Reichl, U., Martens, L., & Rapp, E. (2015)The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and InterpretationJournal of Proteome Research, 14 (3), 1557–1565doi: 10.1021/pr501246w.

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Journal Article

Theuerl, S., Kohrs, F., Benndorf, D., Maus, I., Wibberg, D., Schlüter, A., Kausmann, R., Heiermann, M., Rapp, E., Reichl, U., Pühler, A., & Klocke, M. (2015)Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiomeApplied Microbiology and Biotechnology, 99 (18), 7791–7803doi: 10.1007/s00253-015-6627-9.

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2014

Journal Article

Benndorf, D. & Reichl, U. (2014)Proteomics in environmental and technical microbiologyEngineering in Life Sciences, 14 (1), 27–46doi: 10.1002/elsc.201200205.

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Journal Article

Kohrs, F., Heyer, R., Magnussen, A., Benndorf, D., Muth, T., Behne, A., Rapp, E., Kausmann, R., Heiermann, M., & Klocke, M. (2014)Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plantsAnaerobe, 29, 59–67doi: 10.1016/j.anaerobe.2013.11.009.

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2013

Journal Article

Hanreich, A., Schimpf, U., Zakrzewski, M., Schlüter, A., Benndorf, D., Heyer, R., Rapp, E., Puhler, A., Reichl, U., & Klocke, M. (2013)Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradationSystematic and Applied Microbiology, 36 (5), 330–338doi: 10.1016/j.syapm.2013.03.006.

MPG.PuRe

Journal Article

Heyer, R., Kohrs, F., Benndorf, D., Rapp, E., Kausmann, R., Heiermann, M., Klocke, M., & Reichl, U. (2013)Metaproteome analysis of the microbial communities in agricultural biogas plantsNew biotechnology, 30 (6), 614–622doi: 10.1016/j.nbt.2013.01.002.

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Journal Article

Kluge, S., Rourou, S., Vester, D., Majoul, S., Benndorf, D., Genzel, Y., Rapp, E., Kallel, H., & Reichl, U. (2013)Proteome analysis of virus-host cell interaction: rabies virus replication in Vero cells in two different mediaApplied Microbiology and Biotechnology, 97 (12), 5493–5506doi: 10.1007/s00253-013-4939-1.

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Journal Article

Muth, T., Benndorf, D., Reichl, U., Rapp, E., & Martens, L. (2013)Searching for a needle in a stack of needles: challenges in metaproteomics data analysis.Molecular BioSystems, 9 (4), 578–585doi: 10.1039/c2mb25415h.

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publisher-version

2012

Journal Article

Hanreich, A., Heyer, R., Benndorf, D., Rapp, E., Pioch, M., Reichl, U., & Klocke, M. (2012)Metaproteome analysis to determine the metabolically active part of thermophilic microbial community producing biogas from agricultural biomassCanadian Journal of Microbiology, 58 (7), 917–922doi: 10.1139/W2012-058.

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Journal Article

Kluge, S., Hoffmann, M., Benndorf, D., Rapp, E., & Reichl, U. (2012)Proteomic tracking and analysis of a bacterial mixed cultureProteomics, 12 (12), 1893–1901doi: 10.1002/pmic.201100362.

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2011

Journal Article

Kolvenbach, B. A., Lenz, M., Benndorf, D., Rapp, E., Fousek, J., Vlcek, C., Schäffer, A., Gabriel, F. L. P., Kohler, H.-P. E., & Corvini, P. F. X. (2011)Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3AMB Express, 1, 8doi: 10.1186/2191-0855-1-8.

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publisher-version

Journal Article

Kuhn, R., Benndorf, D., Rapp, E., Reichl, U., Palese, L., & Pollice, A. (2011)Metaproteome analysis of sewage sludge from membrane bioreactorsProteomics, 11 (13), 2738–2744doi: 10.1002/pmic.201000590.

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