Kremling, A.; Bettenbrock, K.; Stelling, J.; Reichl, U.; Gilles, E. D.: Systemorientierte Bioprozesstechnik: interdisziplinäre Forschung in Biologie, System- und Computerwissenschaften. Magdeburger Wissenschaftsjournal 6 (1/2), pp. 29 - 36 (2001)

Rapp, E.; Reichl, U. (Eds.): Advances in Glycobiotechnology. Springer, Cham, Switzerland (2021), 463 pp.

Benner, P.; Findeisen, R.; Flockerzi, D.; Reichl, U.; Sundmacher, K. (Eds.): Large-Scale Networks in Engineering and Life Sciences. Springer International Publishing, Switzerland (2014), 388 pp.

Heyer, R.; Schallert, K.; Briza, M.; Benndorf, D.: Metaproteomic Analysis of Biogas Plants: A Complete Workflow from Lab to Bioinformatics. In: Metaproteomics: Methods in Molecular Biology, pp. 99 - 113 (Ed. Salerno, C.). Humana Press, New York, NY (2024)

Göbel, S.; Pelz, L.; Reichl, U.; Genzel, Y.: Upstream processing for viral vaccines - Process intensification. In: Bioprocessing of Viral Vaccines, pp. 137 - 174 (Eds. Kamen, A.; Cervera, L.). CRC Press, Boca Raton (2023)

Pelz, L.; Göbel, S.; Jaen , K.; Reichl, U.; Genzel, Y.: Upstream processing for viral vaccines – General aspects. In: Bioprocessing of Viral Vaccines, pp. 79 - 136 (Eds. Kamen , A.; Cervera , L.). CRC Press, Boca Raton (2023)

Alagesan, K.; Hoffmann, M.; Rapp, E.; Kolarich, D.: Glycoproteomics Technologies in Glycobiotechnology. In: Advances in Glycobiotechnology, pp. 413 - 434 (Eds. Rapp, E.; Reichl, U.). Springer, Cham, Switzerland (2021)

Butler, M.; Reichl, U.: Animal Cell Expression Systems. In: Advances in Glycobiotechnology, pp. 1 - 36 (Eds. Rapp, E.; Reichl, U.). Springer, Cham, Switzerland (2021)

Cajic, S.; Hennig, R.; Burock, R.; Rapp, E.: Capillary (Gel) Electrophoresis-Based Methods for Immunoglobulin (G) Glycosylation Analysis. In: Antibody Glycosylation, pp. 137 - 172 (Ed. Pezer, M.). Springer, Cham, Switzerland (2021)

Pralow, A.; Cajic, S.; Alagesan, K.; Kolarich, D.; Rapp, E.: State-of-the-Art Glycomics Technologies in Glycobiotechnology. In: Advances in Glycobiotechnology, pp. 379 - 411 (Eds. Rapp, E.; Reichl, U.). Springer, Cham, Switzerland (2021)

Rexer, T.; Laaf, D.; Gottschalk, J.; Frohnmeyer, H.; Rapp, E.; Elling, L.: Enzymatic Synthesis of Glycans and Glycoconjugates. In: Advances in Glycobiotechnology, pp. 231 - 280 (Eds. Rapp, E.; Reichl, U.). Springer, Cham, Switzerland (2021)

Bürgin, T.; Coronel, J.; Hagens, G.; Keebler, M. V.; Genzel, Y.; Reichl, U.; Anderlei, T.: Orbitally Shaken Single-Use Bioreactor for Animal Cell Cultivation: Fed-Batch and Perfusion Mode. In: Animal Cell Biotechnology, pp. 105 - 123 (Ed. Pörtner, R.). Humana, New York (2020)

Nikolay, A.; Bissinger, T.; Gränicher, G.; Wu, Y.; Genzel, Y.; Reichl, U.: Perfusion Control for High Cell Density Cultivation and Viral Vaccine Production. In: Animal Cell Biotechnology, pp. 141 - 168 (Ed. Pörtner, R.). Humana, New York (2020)

Hoffmann, D.; Leber, J.; Loewe, D.; Lothert, K.; Oppermann, T.; Zitzmann, J.; Weidner, T.; Salzig, D.; Wolff, M. W.; Czermak, P.: Purification of New Biologicals Using Membrane-Based Processes. In: Current Trends and Future Developments on (Bio-) Membranes, pp. 123 - 150 (Eds. Basile, A.; Charcosset, C.). Elsevier (2019)

Muth, T.; Rapp, E.; Berven, F. S.; Barsnes, H.; Vaudel, M.: Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics. In: Modern Proteomics – Sample Preparation, Analysis and Practical Applications,, pp. 217 - 226 (Eds. Mirzaei, H.; Carrasco , M.). Springer International Publishing, Cham (2016)

Hennig, R.; Rapp, E.; Kottler, R.; Cajic, S.; Reichl, U.: N -Glycosylation Fingerprinting of Viral Glycoproteins by xCGE-LIF. In: Carbohydrate-Based Vaccines: Methods and Protocols, pp. 123 - 143. Springer, New York (2015)

Kalbfuß, B.; Reichl, U.: Viral Vaccines Purification. In: Vaccine Development and Manufacturing, pp. 97 - 181. John Wiley & Sons, Hobroken, New Jersey (2015)

Genzel, Y.; Rödig, J.; Rapp, E.; Reichl, U.: Vaccine production: Upstream processing with adherent or suspension cell lines. In: Animal Cell Biotechnology: Methods and Protocols, pp. 371 - 393 (Ed. Pörtner, R.). HUMANA Press Inc., New York (2014)

Merten, O.-W.; Bakker, W. A.M.; Vorlop, J.; Reiter, M.; Visnovsky, G.; Jäger, V.; Merabishvili, M.; Reichl, U.: Virus Production Under Suspension Conditions. In: Industrial Scale Suspension Culture of Living Cells, pp. 503 - 554. Wiley Blackwell, Weinheim (2014)

Mangold, M.; Schmidt, J. K.; Tobiska, L.; Tsotsas, E.: Modeling of Membrane Reactors. In: Membrane Reactors: Distributing Reactants to Improve Selectivity and Yield, pp. 29 - 62 (Ed. Seidel-Morgenstern, A.). Wiley-VCH, Weinheim (2010)

Genzel, Y.; Reichl, U.: Vaccine production - state of the art and future needs in upstream processing. In: Animal Cell Biotechnology: Methods and Protocols, pp. 457 - 473 (Ed. Pörtner, R.). HUMANA Press Inc., Totowa, New Jersey (2007)

Reichl, U.; Sidorenko, Y.: Dynamics of Virus-Host Cell Interaction. In: Bioinformatics: From Genomes to Therapies, pp. 861 - 898 (Ed. Lengauer, T.). Wiley-VCH, Weinheim (2007)

Ritter, J. B.; Genzel, Y.; Reichl, U.: Monitoring of Extracellular TCA Cycle Intermediates in Mammalian Cell Culture. In: Cell Technology for Cell Products: Proceedings of the 19th ESACT Meeting, pp. 603 - 605 (Ed. Smith, R.). Springer, Dordrecht, The Netherlands (2007)

Espinel-Rios, S.; Huber, N.; Alcalá Orozco, E. A.; Morabito, B.; Rexer, T.; Reichl, U.; Klamt, S.; Findeisen, R.: Cell-free biosynthesis meets dynamic optimization and control: a fed-batch framework. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, August 28, 2022 - August 31, 2022. IFAC-PapersOnLine 55 (23), pp. 92 - 97 (2022)

Zoun, R.; Schallert, K.; Broneske, D.; Trifonova, I.; Chen, X.; Heyer, R.; Benndorf, D.; Saake, G.: Efficient transformation of protein sequence databases to columnar index schema. In: Database and Expert Systems Applications. DEXA 2019, pp. 67 - 72 (Ed. Anderst-Kotsis , G.). DEXA: International Conference on Database and Expert Systems Applications , Linz, Austria, August 26, 2019 - August 29, 2019. Springer, Cham, Switzerland (2019)

Duvigneau, S.; Dürr, R.; Laske, T.; Bachmann, M.; Dostert, M.; Reichl, U.; Kienle, A.: Mathematical modeling as a tool to improve influenza vaccine production processes. FOSBE 2018, Chicago, Illinois, USA, August 05, 2018 - August 08, 2018. IFAC-PapersOnLine 51 (19), pp. 1 - 4 (2018)

Rüdiger, D.; Kupke, S. Y.; Reichl, U.: A multiscale model of influenza A virus replication covering highly different infection conditions in cell cultures. IFAC-PapersOnLine 51 (19), pp. 32 - 33 (2018)

Zoun, R.; Campero Durand, G.; Schallert , K.; Patrikar, A.; Broneske, D.; Fenske, W.; Heyer, R.; Benndorf, D.; Saake, G.: Protein Identification as a Suitable Application for Fast Data Architecture. DEXA : International Conference on Database and Expert Systems Applications , Regensburg, Germany, September 03, 2018 - September 06, 2018. Database and Expert Systems Applications: DEXA 2018 International Workshops BDMICS, BIOKDD, and TIR 903, pp. 168 - 178 (2018)

Dürr, R.; Duvigneau, S.; Laske, T.; Bachmann, M.; Kienle, A.: Analyzing the Impact of Heterogeneity in Genetically Engineered Cell Lines for Influenza Vaccine Production Using Population Balance Modeling. Foundations of Systems Biology in Engineering - FOSBE 2016 — Magdeburg, Germany, 9—12 October 2016, Magdeburg, Germany, October 09, 2016 - October 12, 2016. IFAC-PapersOnLine 49 (26), pp. 225 - 230 (2016)

Kramer, B.; Tüngler, R.; Bettenbrock, K.; Conradi, C.: A compact mathematical model of mandelate racemase production and chaperone overexpression in E. coli. 8th Vienna Interantional Conference on Mathematical Modelling , Vienna, Austria, February 18, 2015 - February 20, 2015. IFAC-PapersOnLine 48 (1), pp. 23 - 28 (2015)

Rehberg, M.; Wetzel, M.; Ritter, J.; Reichl, U.: The Regulation of Glutaminolysis and Citric Acid Cycle Activity During Mammalian Cell Cultivation. 12th IFAC Symposium on Computer Applications in Biotechnology - CAB 2013, Mumbai, India, December 16, 2013 - December 18, 2013. IFAC Proceedings Volumes 46 (31), pp. 48 - 53 (2013)

Dürr, R.; Müller, T.; Isken, B.; Schulze-Horsel, J.; Reichl, U.; Kienle, A.: Distributed Modeling and Parameter Estimation of Influenza Virus Replication During Vaccine Production. MATHMOD 2012 - 7th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 15, 2012 - February 17, 2012. IFAC Proceedings Volumes 45 (2), pp. 320 - 325 (2012)

Isken, B.; Schulze-Horsel, J.; Bock, A.; Genzel, G.; Reichl, U.: Monitoring of Host-Cell Infection and Virus-Induced Apoptosis in Influenza Vaccine Production. In: ESACT - Proceedings of the 21st Annual meeting of the European Society for animal cell technology (ESACT), pp. 675 - 683 (Eds. Jenkins, N.; Barron, N.; Alves, P.). 21st ESACT Meeting , Dublin, Ireland, June 07, 2009 - June 10, 2009. (2012)

Kröber, T.; Wolff, M. W.; Lehmann, S.; Zimmermann, A.; Reichl, U.: Accounting for the Entire Influenza Hemagglutinin during a Flu Vaccine Production Process. In: ESACT - Proceedings of the 21st Annual meeting of the European Society for animal cell technology (ESACT), pp. 685 - 689. 21st ESACT Meeting , Dublin, Ireland, June 07, 2009 - June 10, 2009. Berlin (2012)

Lohr, V.; Rath, A.; Jordan, I.; Sandig, V.; Genzel, Y.; Reichl, U.: Avian Designer Cells AGE1.CR as Candidates for MVA and Influenza Vaccine Production. In: ESACT - Proceedings of the 21st Annual meeting of the European Society for animal cell technology (ESACT), pp. 615 - 631 (Eds. Jenkins, N.; Barron, N.; Alves, P.). 21st ESACT Meeting, Dublin, Ireland, June 07, 2009 - June 10, 2009. (2012)

Öncül, A. A.; Genzel, Y.; Reichl, U.; Thévenin, D.: Flow characterization in wave bioreactors using Computational Fluid Dynamics. In: ESACT - Proceedings of the 21st Annual meeting of the European Society for animal cell technology (ESACT), pp. 455 - 469 (Eds. Jenkins, N.; Barron, N.; Alves, P.). 21st ESACT Meeting, Dublin, Ireland, June 07, 2009 - June 10, 2009. Dordrecht (2012)

Roedig, J.; Rapp, E.; Hennig, R.; Schwarzer, J.; Reichl, U.: Optimized CGE-LIF-based glycan analysis for high-throughput applications. In: ESACT - Proceedings of the 21st Annual meeting of the European Society for animal cell technology (ESACT), pp. 599 - 603 (Eds. Jenkins, N.; Barron, N.; Alves, P.). 21st ESACT Meeting, Dublin, Ireland, June 07, 2009 - June 10, 2009. (2012)

Schenkendorf, R.; Mangold, M.; Reichl, U.: Parameter Identification of Time-Delay Systems: A Flatness Based Approach. MATHMOD 2012 - 7th Vienna International Conference on Mathematical Modelling, Vienna, Austria, February 15, 2012 - February 17, 2012. IFAC Proceedings Volumes 45 (2), pp. 165 - 170 (2012)

Müller, T.; Dürr, R.; Isken, B.; Schulze-Horsel, J.; Reichl, U.; Kienle, A.: Population balance modelling of influenza virus replication during vaccine prodcution - Influence of apoptosis. In: 21st European Symposium on Computer Aided Process Engineering - Part A, pp. 1336 - 1340 (Eds. Pistikopoulos, E.N.; Georgiadis, M.C.; Kokossis, A.C.). ESCAPE 21 - 21st European Symposium on Computer Aided Process Engineering, Chalkidiki, Greece, May 29, 2011 - June 01, 2011. (2011)

Bock, A.; Genzel, Y.; Reichl, U.: Monitoring of Cell activity: online oxygen uptake rates in pulsed aerated cell culture. In: Cells and Culture: Proceedings of the 20th ESACT Meeting, pp. 391 - 396 (Ed. Noll, T.). 20th ESACT Meeting, Dresden, Germany, June 17, 2007 - June 20, 2007. (2010)

Genzel, Y.; Dietzsch, C.; Reichl, U.: Comparing Vero and MDCK cells for influenza A virus production in microcarrier systems. In: Cells and Culture: Proceedings of the 20th ESACT Meeting, pp. 635 - 638 (Ed. Noll, T.). 20th ESACT Meeting, Dresden, Germany, June 17, 2007 - June 20, 2007. (2010)

Öncül, A.A.; Janiga, G.; Genzel, Y.; Reichl, U.; Thévenin, D.: Two-population CFD simulation: microcarrier system for adherent cell growth in Wave Bioreactors. In: 4th International Conference on Population Balance Modelling: PBM 2010, pp. 667 - 681. 4th International Conference on Population Balance Modelling, Berlin, Germany, September 15, 2010 - September 17, 2010. (2010)

Ritter, J. B.; Genzel, Y.; Reichl, U.: Metabolite Analysis in Mammalian Cells: How to generate reliable data sets? In: Cells and Culture: Proceedings of the 20th ESACT Meeting, pp. 397 - 406 (Ed. Noll, T.). 20th ESACT Meeting, Dresden, Germany, June 17, 2007 - June 20, 2007. (2010)

Schulze-Horsel, J.; Schulze, M.; Genzel, Y.; Reichl, U.: Single-cell approach in influenza vaccine production: apoptosis and virus protein production. In: Cells and Culture: Proceedings of the 20th ESACT Meeting, pp. 25 - 28 (Ed. Noll, T.). 20th ESACT Meeting, Dresden, Germany, June 17, 2007 - June 20, 2007. (2010)

Schwarzer, J.; Rapp, E.; Reichl, U.: Glycosylation of Influenza A Virus Hemagglutinin. In: Cells and Culture: Proceedings of the 20th ESACT Meeting, pp. 621 - 624 (Ed. Noll, T.). 20th ESACT Meeting, Dresden, Germany, June 17, 2007 - June 20, 2007. (2010)

Vester, D.; Rapp, E.; Genzel, Y.; Gade, D.; Reichl, U.: Proteomic analysis of influenza A virus infected mammalian cells by 2D-DIGE. In: Cells and Culture: Proceedings of the 20th ESACT Meeting, pp. 429 - 432 (Ed. Noll, T.). 20th ESACT Meeting, Dresden, Germany, June 17, 2007 - June 20, 2007. (2010)

Wahl, A.; Sidorenko, Y.; Genzel, Y.; Reichl, U.: Metabolic flux distribution during growth of adherent growing MDCK cells in different media. In: Cells and Culture: Proceedings of the 20th ESACT Meeting, pp. 459 - 462 (Ed. Noll, T.). 20th ESACT Meeting, 2007-06-17, June 20, 2007. (2010)

Mueller, T.; Schulze-Horsel, J.; Sidorenko, Y.; Reichl, U.; Kienle, A.: Population balance modeling of influenza virus replication in MDCK cells during vaccine production. In: 18th European Symposium on Computer Aided Process Engineering: ESCAPE 18, Vol. 25, pp. 133 - 138 (Eds. Braunschweig, B.; Joulia, X.). 18th European Symposium on Computer Aided Process Engineering - ESCAPE, Lyon, France, June 01, 2008 - June 04, 2008. (2008)

Bock, A.; Reichl, U.: Closed loop control of perfusion systems in high-density cell culture. In: Cell Technology for Cell Products: Proceedings of the 19th ESACT Meeting, pp. 549 - 551 (Ed. Smith, R.). 19th ESACT Meeting, Harrogate, UK, June 05, 2005 - June 08, 2005. Springer, Dordrecht, The Netherlands (2007)

Genzel, Y.; Fischer, M.; Olmer, R. M.; Schäfer, B.; Best, C.; König, S.; Hundt, B.; Reichl, U.: Serum-free influenza vaccine production with MDCK cells in wave-bioreactor and 5L-stirred tank bioreactor. In: Cell Technology for Cell Products: Proceedings of the 19th ESACT Meeting, pp. 563 - 565 (Ed. Smith, R.). 19th ESACT Meeting , Harrogate, UK, June 05, 2005 - June 08, 2005. Springer, Dordrecht, The Netherlands (2007)