Max Planck Institute for Dynamics of Complex Technical Systems

Publications of Erdmann Rapp

All genres

Journal Article (112)

2016

Journal Article

Tanca, A., Palomba, A., Fraumene, C., Pagnozzi, D., Manghina, V., Deligios, M., Muth, T., Rapp, E., Martens, L., Addis, M. F., & Uzzau, S. (2016)The impact of sequence database choice on metaproteomic results in gut microbiota studiesMicrobiome, 4, 51doi: 10.1186/s40168-016-0196-8.

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Thiesler, C. T., Cajic, S., Hoffmann, D., Thiel, C., van Diepen, L., Hennig, R., Sgodda, M., Weißmann, R., Reichl, U., Steinemann, D., Diekmann, U., Huber, N. M. B., Oberbeck, A., Cantz, T., Kuss, A. W., Körner, C., Schambach, A., Rapp, E., & Buettner, F. F. R. (2016)Glycomic Characterization of Induced Pluripotent Stem Cells Derived from a Patient Suffering from Phosphomannomutase 2 Congenital Disorder of Glycosylation (PMM2-CDG)Molecular and Cellular Proteomics, 15 (4), 1435–1452doi: 10.1074/mcp.M115.054122.

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2015

Journal Article

Karsten, C. B., Büttner, F. F. R., Cajic, S., Nehlmeier, I., Neumann, B., Klippert, A., Sauermann, U., Reichl, U., Gerardy-Schahn, R., Rapp, E., Stahl-Hennig, C., & Pöhlmann, S. (2015)Exclusive Decoration of Simian Immunodeficiency Virus Env with High-Mannose Type N-Glycans Is Not Compatible with Mucosal Transmission in Rhesus MacaquesJournal of Virology, 89 (22), 11727–11733 doi: 10.1128/JVI.01358-15.

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publisher-version

Journal Article

Kluge, S., Benndorf, D., Genzel, Y., Scharfenberg, K., Rapp, E., & Reichl, U. (2015)Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspensionVaccine, 33 (35), 4269–4280doi: 10.1016/j.vaccine.2015.02.077.

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Journal Article

Kohrs, F., Wolter, S., Benndorf, D., Heyer, R., Hoffmann, M., Rapp, E., Bremges, A., Sczyrba, A., Schlüter, A., & Reichl, U. (2015)Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communitiesProteomics, 15 (20), 3585–3589doi: 10.1002/pmic.201400557.

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Kolmeder , C. A., Ritari, J., Verdam , F. J., Muth, T., Keskitalo, S., Varjosalo , M., Fuentes, S., Greve , J. W., Buurman , W. A., Reichl, U., Rapp, E., Martens, L., Palva, A., Salonen, A., Rensen, S. S., & de Vos, W. M. (2015)Colonic metaproteomic signatures of active bacteria and the host in obesityProteomics, 15 (20), 3544–3552doi: 10.1002/pmic.201500049.

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Muth, T., Behne, A., Heyer, R., Kohrs, F., Benndorf, D., Hoffmann, M., Lehteva, M., Reichl, U., Martens, L., & Rapp, E. (2015)The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and InterpretationJournal of Proteome Research, 14 (3), 1557–1565doi: 10.1021/pr501246w.

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Journal Article

Muth, T., Kolmeder, C. A., Salojärvi, J., Keskitalo, S., Varjosalo, M., Verdam, F. J., Rensen, S. S., Reichl, U., de Vos, W. M., Rapp, E., & Martens, L. (2015)Navigating through metaproteomics data: A logbook of database searchingProteomics, 15 (20), 3439–3453doi: 10.1002/pmic.201400560.

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Journal Article

Oveland, E., Muth, T., Rapp, E., Martens, L., Berven, F. S., & Barsnes, H. (2015)Viewing the proteome: How to visualize proteomics data?Proteomics, 15 (8), 1341–1355doi: 10.1002/pmic.201400412.

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Journal Article

Püttker, S., Kohrs, F., Benndorf, D., Heyer, R., Rapp, E., & Reichl, U. (2015)Metaproteomics of activated sludge from a wastewater treatment plant- a pilot studyProteomics, 15 (20), 3596–3601doi: 10.1002/pmic.201400559.

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Journal Article

Serve, A., Pieler, M., Benndorf, D., Rapp, E., Wolff, M. W., & Reichl, U. (2015)Comparison of Influenza Virus Particle Purification Using Magnetic Sulfated Cellulose Particles with an Established Centrifugation Method for AnalyticsAnalytical Chemistry, 87 (21), 10708–10711doi: 10.1021/acs.analchem.5b02681.

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publisher-version

Journal Article

Theuerl, S., Kohrs, F., Benndorf, D., Maus, I., Wibberg, D., Schlüter, A., Kausmann, R., Heiermann, M., Rapp, E., Reichl, U., Pühler, A., & Klocke, M. (2015)Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiomeApplied Microbiology and Biotechnology, 99 (18), 7791–7803doi: 10.1007/s00253-015-6627-9.

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2014

Journal Article

Huffman, J. E., Pucic-Bakovic, M., Klaric, L., Hennig, R., Selman, M. H. J., Vuckovic, F., Novokmet, M., Kristic, J., Borowiak, M., Muth, T., Polasek, O., Razdorov, G., Gornik, O., Plomp, R., Theodorarou, E., Wright, A. F., Rudan, I., Hayward, C., Campbell, H., Deelder, A. M., Reichl, U., Aulchenko, Y. S., Rapp, E., Wuhrer , M., & Lauc , G. (2014)Comparative Performance of Four Methods for High-throughput Glycosylation Analysis of Immunoglobulin G in Genetic and Epidemiological ResearchMolecular and Cellular Proteomics, 13 (6), 1598–1610doi: 10.1074/mcp.M113.037465.

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Journal Article

Kohrs, F., Heyer, R., Magnussen, A., Benndorf, D., Muth, T., Behne, A., Rapp, E., Kausmann, R., Heiermann, M., & Klocke, M. (2014)Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plantsAnaerobe, 29, 59–67doi: 10.1016/j.anaerobe.2013.11.009.

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Journal Article

Muth, T., Weilnböck, L., Rapp, E., Huber, C. G., Martens, L., Vaudel, M., & Barnsnes, H. (2014)DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass SpectraJournal of Proteome Research, 13 (2), 1143–1146doi: 10.1021/pr4008078.

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York, W. S., Agravat, S., Aoki-Kinoshita, K. F., Mcbride, R., Campell, F., Castello, C. E., Dell, A., Feizi, T., Haslam, S. M., Karlsson, N., Khoo, K.-H., Kolarich, D., Liu, Y., Novotny, M., Packer, N. H., Paulson, J. C., Rapp, E., Ranzinger, R., Rudd, P. M., Smith, D. F., Struwe, W. B., Tiemeyer, M., Wells, L., Zaia, J., & Kettner, C. (2014)MIRAGE: The minimum information required for a glycomics experimentGlycobiology, 24 (5), 402–406doi: 10.1093/glycob/cwu018.

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2013

Journal Article

Behne, A., Muth, T., Borowiak, M., Reichl, U., & Rapp, E. (2013)glyXalign: High-throughput migration time alignment preprocessing of electrophoretic data retrieved via multiplexed capillary gel electrophoresis with laser-induced fluorescence detection-based glycoprofilingElectrophoresis, 34 (16), 2311–2315doi: 10.1002/elps.201200696.

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Journal Article

Bunz, S.-C., Rapp, E., & Neusüss, C. (2013)Capillary Electrophoresis/Mass Spectrometry of APTS-Labeled Glycans for the Identification of Unknown Glycan Species in Capillary Electrophoresis/Laser-Induced Fluorescence SystemsAnalytical Chemistry, 85 (21), 10218–10224doi: 10.1021/ac401930j.

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Journal Article

Genzel, Y., Behrendt, I., Rödig, J., Rapp, E., Kueppers, C., Kochanek, S., Schiedner, G., & Reichl, U. (2013)CAP, a new human suspension cell line for influenza virus productionApplied Microbiology and Biotechnology, 97 (1), 111–122doi: 10.1007/s00253-012-4238-2.

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Journal Article

Hanreich, A., Schimpf, U., Zakrzewski, M., Schlüter, A., Benndorf, D., Heyer, R., Rapp, E., Puhler, A., Reichl, U., & Klocke, M. (2013)Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradationSystematic and Applied Microbiology, 36 (5), 330–338doi: 10.1016/j.syapm.2013.03.006.

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