Publications of the Institute

Max Planck Institute for Dynamics of Complex Technical Systems

Journal Article (115)

2013

Journal Article

Hütter, J.; Rödig, J. V.; Höper, D.; Seeberger, P. H.; Reichl, U.; Rapp, E.; Lepenies, B.: Toward Animal Cell Culture-based Influenza Vaccine Design: Viral Hemagglutinin N-Glycosylation Markedly Impacts Immunogenicity. The Journal of Immunology 190 (1), pp. 220 - 230 (2013)

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Isakov, A. I.; Kotelnikova, E. N.; Kryuchkova, L. Y.; Lorenz, H.: Effect of crystallization conditions on polymorphic diversity of malic acid RS — Racemate. Transactions of Tianjin University 19 (2), pp. 86 - 91 (2013)

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Ivanov, I.; Vidaković-Koch, T.; Sundmacher, K.: Alternating electron transfer mechanism in the case of high-performance tetrathiafulvalene–tetracyanoquinodimethane enzymatic electrodes. Journal of Electroanalytical Chemistry 690, pp. 68 - 73 (2013)

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Jahn, S.; Haverkorn van Rijsevijk, B. R.; Sauer, U.; Bettenbrock, K.: A role for EIIANtr in controlling fluxes in the central metabolism of E. coli K12. Biochimica et Biophysica Acta-Molecular Cell Research 1833 (12), pp. 2879 - 2889 (2013)

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Javeed, S.; Qamar, S.; Ashraf, W.; Warnecke, G.; Seidel-Morgenstern, A.: Analysis and numerical investigation of two dynamic models for liquid chromatography. Chemical Engineering Science 90, pp. 17 - 31 (2013)

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Jordan, I.; Lohr, V.; Genzel, Y.; Reichl, U.; Sandig, V.: Elements in the Development of a Production Process for Modified Vaccinia Virus Ankara. Microorganisms 1 (1), pp. 100 - 121 (2013)

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Jungreuthmeyer, C.; Nair, G.; Klamt, S.; Zanghellini, J.: Comparison and improvement of algorithms for computing minimal cut sets. BMC Bioinformatics 14 (1), 318 (2013)

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Kaemmerer, H.; Seidel-Morgenstern, A.; Lorenz, H.: Chiral separation of systems of high eutectic composition by a combined process: Case study of serine enantiomers. Chemical Engineering and Processing 67, pp. 71 - 79 (2013)

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Kirsch, S.; Hanke-Rauschenbach, R.; Stein, B.; Kraume, R.; Sundmacher, K.: The Electro-Oxidation of H₂, CO in a Model PEM Fuel Cell: Oscillations, Chaos, Pulses. Journal of the Electrochemical Society 160 (4), pp. F436 - F446 (2013)

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Kluge, S.; Rourou, S.; Vester, D.; Majoul, S.; Benndorf, D.; Genzel, Y.; Rapp, E.; Kallel, H.; Reichl, U.: Proteome analysis of virus-host cell interaction: rabies virus replication in Vero cells in two different media. Applied Microbiology and Biotechnology 97 (12), pp. 5493 - 5506 (2013)

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Kolarich, D.; Rapp, E.; Struwe, W. B.; Haslam, S. M.; Zaia, J.; McBride, R.; Agravat, S.; Campell, M. P.; Kato, M.; Ranzinger, R. et al.; Kettner, C.; York, W. S.: The Minimum Information Required for a Glycomics Experiment (MIRAGE) Project: Improving the Standards for Reporting Mass-spectrometry-based Glycoanalytic Data. Molecular and Cellular Proteomics 12 (4), pp. 991 - 995 (2013)

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Kottler, R.; Mank, M.; Hennig, R.; Müller-Werner, B.; Stahl, B.; Reichl, U.; Rapp, E.: Development of a high-throughput glycoanalysis method for the characterization of oligosaccharides in human milk utilizing multiplexed capillary gel electrophoresis with laser-induced fluorescence detection. Electrophoresis 34 (16), pp. 2323 - 2336 (2013)

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Kröber, T.; Wolff, M. W.; Hundt, B.; Seidel-Morgenstern, A.; Reichl, U.: Continuous purification of influenza virus using simulated moving bed chromatography. Journal of Chromatography A 1307, pp. 99 - 110 (2013)

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Kuwertz , R.; González Martinez , I.; Vidaković-Koch, T.; Sundmacher, K.; Turek , T.; Kunz , U.: Energy-efficient chlorine production by gas-phase HCl electrolysis with oxygen depolarized cathode. Electrochemistry Communications (34), pp. 320 - 322 (2013)

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Lorenz, H.; Le Minh, T.; Kaemmerer, H.; Buchholz, H. K.; Seidel-Morgenstern, A.: Exploitation of shifts of eutectic compositions in crystallization-based enantioseparation. Chemical Engineering Research and Design 91 (10), pp. 1890 - 1902 (2013)

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Mao, Q.; Krewer, U.: Total harmonic distortion analysis of oxygen reduction reaction in proton exchange membrane fuel cells. Electrochimica Acta 103, pp. 188 - 198 (2013)

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Markert, J.; Brunsch, Y.; Munkelt, T.; Kiedorf, G.; Behr, A.; Hamel, C.; Seidel-Morgenstern, A.: Analysis of the reaction network for the Rh-catalyzed hydroformylation of 1-dodecene in a thermomorphic multicomponent solvent system. Applied Catalysis A: General 462-463, pp. 287 - 295 (2013)

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Martinez Cristancho, C.; David, F.; Franco-Lara, E.; Seidel-Morgenstern, A.: Discontinuous and continuous purification of single-chain antibody fragments using immobilized metal ion affinity chromatography. Journal of Biotechnology 163 (2), pp. 233 - 242 (2013)

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Medeiros de Souza, L. G.; Haida, H.; Thévenin, D.; Seidel-Morgenstern, A.; Janiga, G.: Model selection and parameter estimation for chemical reactions using global model structure. Computers and Chemical Engineering 58, pp. 269 - 277 (2013)

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Melas, I. N.; Samaga, R.; Alexopoulos, L. G.; Klamt, S.: Detecting and Removing Inconsistencies between Experimental Data and Signaling Network Topologies Using Integer Linear Programming on Interaction Graphs. PLoS Computational Biology 9 (9), e1003204 (2013)

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Melnikov, S.; Holtzel, A.; Seidel-Morgenstern, A.; Tallarek, U.: How Ternary Mobile Phases Allow Tuning of Analyte Retention in Hydrophilic Interaction Liquid Chromatography. Analytical Chemistry 85 (18), pp. 8850 - 8856 (2013)

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Melnikov, S.; Höltzel, A.; Seidel-Morgenstern, A.; Tallarek, U.: Adsorption of Water-Acetonitrile Mixtures to Model Silica Surfaces. The Journal of Physical Chemistry C 117 (13), pp. 6620 - 6631 (2013)

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Müller, T.; Dürr, R.; Isken, B.; Schulze-Horsel, J.; Reichl, U.; Kienle, A.: Distributed modeling of human influenza a virus-host cell interactions during vaccine production. Biotechnology and Bioengineering 110 (8), pp. 2252 - 2266 (2013)

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Munkelt, T.; Küster, C.; Hamel, C.; Enke, D.; Seidel-Morgenstern, A.: Rückgewinnung und Enantiomerentrennung chiraler Anästhetika mittels modifizierter poröser Gläser. Chemie-Ingenieur-Technik 85 (11), pp. 1686 - 1693 (2013)

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Mutavdžin, I.; Seidel-Morgenstern, A.; Petkovska, M.: Estimation of competitive adsorption isotherms based on nonlinear frequency response experiments using equimolar mixtures–numerical analysis for racemic mixtures. Chemical Engineering Science 89, pp. 21 - 30 (2013)

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Muth, T.; Benndorf, D.; Reichl, U.; Rapp, E.; Martens, L.: Searching for a needle in a stack of needles: challenges in metaproteomics data analysis. Molecular BioSystems 9 (4), pp. 578 - 585 (2013)

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Muth, T.; Peters, J.; Blackburn, J.; Rapp, E.; Martens, L.: ProteoCloud: A full-featured open source proteomics cloud computing pipeline. Journal of Proteomics 88 (Special Issue: New Horizons and Applications for Proteomics [EuPA 2012]), pp. 104 - 108 (2013)

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Neumann, A.; Hoyer, W.; Wolff, M. W.; Reichl, U.; Pfitzner, A.; Roth, B.: New method for density determination of nanoparticles using a CPS disc centrifuge (TM). Colloids and Surfaces B: Biointerfaces 104, pp. 27 - 31 (2013)

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Nowakowski, C.; Kürschner, P.; Eberhard, P.; Benner, P.: Model Reduction of an Elastic Crankshaft for Elastic Multibody Simulations. Zeitschrift für Angewandte Mathematik und Mechanik 93 (4), pp. 198 - 216 (2013)

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Palis, S.; Kienle, A.: H∞ loop shaping control for continuous fluidized bed spray granulation with internal product classification. Industrial and Engineering Chemistry Research 52 (1), pp. 408 - 420 (2013)

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Pearson, J. W.; Stoll, M.: Fast Iterative Solution of Reaction-Diffusion Control Problems Arising from Chemical Processes. SIAM Journal on Scientific Computing 35 (5), pp. B987 - B1009 (2013)

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Peschel, B.; Frentzel, S.; Laske, T.; Genzel, Y.; Reichl, U.: Comparison of influenza virus yields and apoptosis-induction in an adherent and a suspension MDCK cell line. Vaccine 31 (48), pp. 5693 - 5699 (2013)

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Pinna, A.; Heise, S.; Flassig, R.; de la Fuente, A.; Klamt, S.: Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation. BMC Systems Biology 7, 73 (2013)

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Qamar, S.; Abbasi, J. N.; Javeed, S.; Shah, M.; Khan, F. U.; Seidel-Morgenstern, A.: Analytical solutions and moment analysis of chromatographic models for rectangular pulse injections. Journal of Chromatography A 1315, pp. 92 - 106 (2013)

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Qamar, S.; Ahmed, S.: The space–time CE/SE method for solving one-dimensional special relativistic magnetohydrodynamics equations. Computer Physics Communications 184 (4), pp. 1094 - 1105 (2013)

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Qamar, S.; Ashraf, W.: Application of central schemes for solving radiation hydrodynamical models. Computer Physics Communications 184 (5), pp. 1349 - 1363 (2013)

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Qamar, S.; Galan, K.; Elsner, M. P.; Hussain, I.; Seidel-Morgenstern, A.: Theoretical investigation of simultaneous continuous preferential crystallization in a coupled mode. Chemical Engineering Science 98, pp. 25 - 39 (2013)

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Qamar, S.; Rehman, S. M. u.: High Resolution Finite Volume Schemes for Solving Multivariable Biological Cell Population Balance Models. Industrial and Engineering Chemistry Research 52 (11), pp. 4323 - 4341 (2013)

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Qamar, S.; Yousaf, M.: Application of a discontinuous Galerkin finite element method to special relativistic hydrodynamic models. Computers and Mathematics with Applications 65 (8), pp. 1220 - 1232 (2013)

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Rehberg, M.; Ritter, J. B.; Genzel, Y.; Flockerzi, D.; Reichl, U.: The relation between growth phases, cell volume changes and metabolism of adherent cells during cultivation. Journal of Biotechnology 164 (4), pp. 489 - 499 (2013)

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Robl, S.; Gou, L.; Gere, A.; Sordo, M.; Lorenz, H.; Mayer, A.; Pauls, C.; Leonhard, K.; Bardow, A.; Seidel-Morgenstern, A. et al.; Schaber, K.: Chiral separation by combining pertraction and preferential crystallization. Chemical Engineering and Processing 67, pp. 80 - 88 (2013)

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Rödig, J. V.; Rapp, E.; Bohne, J.; Kampe, M.; Kaffka, H.; Bock, A.; Genzel, Y.; Reichl, U.: Impact of Cultivation Conditions on N-glycosylation of Influenza Virus A Hemagglutinin Produced in MDCK Cell Culture. Biotechnology and Bioengineering 110 (6), pp. 1691 - 1703 (2013)

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Rodriguez-Fernandez, M.; Rehberg, M.; Kremling, A.; Banga, J. R.: Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems. BMC Systems Biology 7, 76 (2013)

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Rubiera Landa, H. O.; Flockerzi, D.; Seidel-Morgenstern, A.: A method for efficiently solving the IAST equations with an application to adsorber dynamics. AIChE-Journal 59 (4), pp. 1263 - 1277 (2013)

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Samaga, R.; Klamt, S.: Modeling approaches for qualitative and semi-quantitative analysis of cellular signaling networks. Cell Communication and Signaling 11 (1), 43 (2013)

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Schenkendorf, R.; Mangold, M.: Online model selection approach based on Unscented Kalman Filtering. Journal of Process Control 23 (1), pp. 44 - 57 (2013)

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Sharma, P.; Stagge, S.; Bekker, M.; Bettenbrock, K.; Hellingwerf, K. J.: Kinase activity of ArcB from Escherichia coli is subject to regulation by both ubiquinone and demethylmenaquinone. PLoS One 8 (10), e7541 (2013)

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Sistla, V. S.; Lorenz, H.; Seidel-Morgenstern, A.: Crystallization-Based Resolution Process for the 2,3-Dibenzoyl-d/l-tartrate Salts of d-/l-Serine Benzyl Ester. Crystal Growth & Design 13 (6), pp. 2548 - 2556 (2013)

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Sreedhar, B.; Wagler, A.; Kaspereit, M.; Seidel-Morgenstern, A.: Optimal cut-times finding strategies for collecting a target component from overloaded elution chromatograms. Computers and Chemical Engineering 49 (11), pp. 158 - 169 (2013)

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Stavenhagen, K.; Hinneburg, H.; Thaysen-Andersen, M.; Hartmann, L.; Silva, D. V.; Fuchser, J.; Kaspar, S.; Rapp, E.; Seeberger, P. H.; Kolarich, D.: Quantitative mapping of glycoprotein micro-heterogeneity and macro-heterogeneity: An evaluation of mass spectrometry signal strengths using synthetic peptides and glycopeptides. Journal of Mass Spectrometry 48 (6), pp. 627 - 639 (2013)

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