Open Access Publications at MPI Magdeburg

Max Planck Institute for Dynamics of Complex Technical Systems

Journal Article (1094)

2021

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Puan, K. J.; San Luis, B.; Yusof, N.; Kumar, D.; Andiappan, A. K.; Lee, W.; Cajic, S.; Vuckovic, D.; Chan, J. D.; Döllner, T. et al.; Hou, H. W.; Jiang, Y.; Tian, C.; Agee, M.; Aslibekyan, S.; Auton, A.; Babalola, E.; Bell, R. K.; Bielenberg, J.; Bryc, K.; Bullis, E.; Cameron, B.; Coker, D.; Partida, G. C.; Dhamija, D.; Das, S.; Elson, S. L.; Filshtein, T.; Fletez-Brant, K.; Fontanillas, P.; Freyman, W.; Gandhi, P. M.; Heilbron, K.; Hicks, B.; Hinds, D. A.; Huber, K. E.; Jewett, E. M.; Kleinman, A.; Kukar, K.; Lane, V.; Lin, K.-H.; Lowe, M.; Luff, M. K.; McCreight, J. C.; McIntyre, M. H.; McManus, K. F.; Micheletti, S. J.; Moreno, M. E.; Mountain, J. L.; Mozaffari, S. V.; Nandakumar, P.; Noblin, E. S.; O’Connell, J.; Petrakovitz, A. A.; Poznik, G. D.; Schumacher, M.; Shastri, A. J.; Shelton, J. F.; Shi, J.; Shringarpure, S.; Tran, V.; Tung, J. Y.; Wang, X.; Wang, W.; Weldon, C. H.; Wilton, P.; Rapp, E.; Poidinger, M.; Wang, D. Y.; Soranzo, N.; Lee, B.; Rötzschke, O.: FUT6 deficiency compromises basophil function by selectively abrogating their sialyl-Lewis x expression. Communications Biology 4, 832 (2021)

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Rand, U.; Kupke, S. Y.; Shkarlet, H.; Hein, M. D.; Hirsch, T.; Marichal-Gallardo, P.; Cicin-Sain, L.; Reichl, U.; Bruder, D.: Antiviral Activity of Influenza A Virus Defective Interfering Particles against SARS-CoV-2 Replication In Vitro through Stimulation of Innate Immunity. Cells 10 (7), 1756 (2021)

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Redmann, M.; Bayer, C.; Goyal, P. K.: Low-Dimensional Approximations of High-Dimensional Asset Price Models. SIAM Journal on Financial Mathematics 12 (1), pp. 1 - 28 (2021)

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Rehman, A.; Ali, I.; Zia, S.; Qamar, S.: Well-balanced finite volume multi-resolution schemes for solving the Ripa models. Advances in Mechanical Engineering 13 (3), pp. 1 - 16 (2021)

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Rehman, A.; Aslam, R. D.; Meraj, M.A.; Qamar, S.: High order finite volume weighted essentially non-oscillatory scheme for solving the isentropic two-phase flow model. Results in Applied Mathematics 10, 100155 (2021)

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Reichl, U.; Seidel-Morgenstern, A.; Sundmacher, K.; Tsotsas, E.; van Wachem, B.: Forschungsarbeiten am Institut für Verfahrenstechnik der Otto‐von‐Guericke‐Universität Magdeburg. Chemie Ingenieur Technik 93 (3), pp. 345 - 352 (2021)

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Rüdiger, D.; Pelz, L.; Hein, M. D.; Kupke, S. Y.; Reichl, U.: Multiscale model of defective interfering particle replication for influenza A virus infection in animal cell culture. PLoS Computational Biology 17, e1009357 (2021)

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Ruhnau, J.; Grote, V.; Juárez-Osorio, M.; Bruder, D.; Mahour, R.; Rapp, E.; Rexer, T.; Reichl, U.: Cell-Free Glycoengineering of the Recombinant SARS-CoV-2 Spike Glycoprotein. Frontiers in Bioengineering and Biotechnology 9, 699026 (2021)

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Sadeghi, M.; Cascella, F.; Tenberg, V.; Seidel-Morgenstern, A.; Lorenz, H.: Solubility analysis of pharmaceuticals guaifenesin, ketoprofen, and artemisinin in different solvents. Journal of Molecular Liquids 343, 117503 (2021)

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Sadeghi, M.; Tenberg, V.; Münzberg, S.; Lorenz, H.; Seidel-Morgenstern, A.: Phase equilibria of l–Valine/l–Leucine solid solutions. Journal of Molecular Liquids 340, 117315 (2021)

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Sadovnichii, R.; Kotelnikova, E.; Lorenz, H.: Thermal Deformations of Crystal Structures in the L-Aspartic Acid/L-Glutamic Acid System and DL-Aspartic Acid. Crystals 11, 1102 (2021)

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Saikia, B.; Seidel-Morgenstern, A.; Lorenz, H.: Role of Mechanochemistry in Solid Form Selection and Identification of the Drug Praziquantel. Crystal Growth & Design 21, pp. 5854 - 5861 (2021)

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Sarna, N.; Benner, P.: Data-Driven Model Order Reduction for Problems with Parameter-Dependent Jump-Discontinuities. Computer Methods in Applied Mechanics and Engineering 387, 114168, 30 pages (2021)

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Schneider, P.; Radhakrishnan, M.; Klamt, S.: Systematizing the different notions of growth-coupled product synthesis and a single framework for computing corresponding strain designs. Biotechnology Journal 16, 2100236 (2021)

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Schulze-Niemand, E.; Naumann, M.; Stein, M.: The Activation and Selectivity of the Legionella RavD Deubiquitinase. Frontiers in Molecular Biosciences 8, 770320 (2021)

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Seidel, C.; Nikolic, D.; Felischak, M.; Petkovska, M.; Seidel-Morgenstern, A.; Kienle, A.: Optimization of Methanol Synthesis under Forced Periodic Operation. Processes 9 (5), 872 (2021)

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Shetty, S. C.; Yandrapalli, N.; Pinkwart, K.; Krafft, D.; Vidaković-Koch, T.; Ivanov, I.; Robinson, T.: Directed Signaling Cascades in Monodisperse Artificial Eukaryotic Cells. ACS Nano 15 (10), pp. 15656 - 15666 (2021)

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Shi, H.; Zhang, X.; Sundmacher, K.; Zhou, T.: Model-Based Optimal Design of Phase Change Ionic Liquids for Efficient Thermal Energy Storage. Green Energy & Environment 6 (3), pp. 392 - 404 (2021)

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Shi, H.; Zhou, T.: Computational design of heterogeneous catalysts and gas separation materials for advanced chemical processing. Frontiers of Chemical Science and Engineering 15, pp. 49 - 59 (2021)

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Sivakumar, D.; Stein, M.: Binding of SARS-CoV Covalent Non-Covalent Inhibitors to the SARS-CoV-2 Papain-Like Protease and Ovarian Tumor Domain Deubiquitinases. Biomolecules 11, 802 (2021)

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Song, Z.; Wang, J.; Sundmacher, K.: Evaluation of COSMO-RS for solid-liquid equilibria prediction of binary eutectic solvent systems. Green Energy & Environment 6 (3), pp. 371 - 379 (2021)

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Staufer, O.; De Lora, J. A.; Bailoni, E.; Bazrafshan, A.; Benk, A. S.; Jahnke, K.; Manzer, Z. A.; Otrin, L.; Díez Pérez, T.; Sharon, J. et al.; Steinkühler, J.; Adamala, K. P.; Jacobson, B.; Dogterom, M.; Göpfrich, K.; Stefanovic, D.; Atlas, S. R.; Grunze, M.; Lakin, M. R.; Shreve, A. P.; Spatz, J. P.; López, G. P.: Building a community to engineer synthetic cells and organelles from the bottom-up. eLife 10, e73556 (2021)

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Stoll, A.; Benner, P.: Machine Learning for Material Characterization with an Application for Predicting Mechanical Properties. GAMM-Mitteilungen: Special Issue: Scientific Machine Learning - Part I 44 (1), e202100003, 21 pages (2021)

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Stracy, M.; Schweizer, J.; Sherratt, D. J.; Kapanidis, A. N.; Uphoff, S.; Lesterlin, C.: Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins. Molecular Cell 81 (7), pp. 1499 - 1514 (2021)

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Triemer, S.; Schulze, M.; Wriedt, B.; Schenkendorf, R.; Ziegenbalg, D.; Krewer, U.; Seidel-Morgenstern, A.: Kinetic analysis of the partial synthesis of artemisinin: Photooxygenation to the intermediate hydroperoxide. Journal of Flow Chemistry 11, pp. 641 - 659 (2021)

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Uebbing, J.; Biegler, L. T.; Rihko-Struckmann, L.; Sager, S.; Sundmacher, K.: Optimization of Pressure Swing Adsorption via a Trust-Region Filter Algorithm and Equilibrium Theory. Computers & Chemical Engineering 151, 107340 (2021)

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Van Den Bossche, T.; Arntzen, M. Ø.; Becher, D.; Benndorf, D.; Eijsink, V. G. H.; Henry, C.; Jagtap, P. D.; Jehmlich, N.; Juste, C.; Kunath, B. J. et al.; Mesuere, B.; Muth, T.; Pope, P. B.; Seifert, J.; Tanca, A.; Uzzau, S.; Wilmes, P.; Hettich, R. L.; Armengaud, J.: The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiome 9 (1), 243 (2021)

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Van Den Bossche, T.; Kunath, B. J.; Schallert, K.; Schäpe, S. S.; Abraham, P. E.; Armengaud, J.; Arntzen, M. Ø.; Bassignani, A.; Benndorf, D.; Fuchs, S. et al.; Giannone, R. J.; Griffin, T. J.; Hagen, L. H.; Halder, R.; Henry, C.; Hettich, R. L.; Heyer, R.; Jagtap, P.; Jehmlich, N.; Jensen, M.; Juste, C.; Kleiner, M.; Langella, O.; Lehmann, T.; Leith, E.; May, P.; Mesuere, B.; Miotello, G.; Peters, S. L.; Pible, O.; Reichl, U.; Renard, B. Y.; Schiebenhoefer, H.; Scryba, A.; Tanca, A.; Trappe, K.; Trezzi, J.-P.; Uzzau, S.; Verschaffelt, P.; von Bergen, M.; Wilmes, P.; Wolf, M.; Martens, L.; Muth, T.: Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows. Nature Communications 12 (1), 7305 (2021)

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Vidaković-Koch, T.; Miličić, T.; Živković, L. A.; Chan, H. S.; Krewer, U.; Petkovska, M.: Nonlinear frequency response analysis: a recent review and perspectives. Current Opinion in Electrochemistry 30, 100851 (2021)

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Walke, D.; Schallert, K.; Ramesh, P.; Benndorf, D.; Lange, E.; Reichl, U.; Heyer, R.: MPA_Pathway_Tool: User-Friendly, Automatic Assignment of Microbial Community Data on Metabolic Pathways. International Journal of Molecular Sciences 22 (20), 10992 (2021)

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Walter, J. P.; Brune, A.; Seidel-Morgenstern, A.; Hamel, C.: Model‐based Analysis of Fixed‐bed and Membrane Reactors of Various Scale. Chemie Ingenieur Technik 93 (5), pp. 819 - 824 (2021)

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Walter, J. P.; Brune, A.; Seidel-Morgenstern, A.; Hamel, C.: Process Intensification of the Propane Dehydrogenation Considering Coke Formation, Catalyst Deactivation and Regeneration—Transient Modelling and Analysis of a Heat-Integrated Membrane Reactor. Catalysts 11, 1056 (2021)

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Wang, M.; Weber, A.; Hartig, R.; Zheng, Y.; Krafft, D.; Vidaković-Koch, T.; Zuschratter, W.; Ivanov, I.; Sundmacher, K.: Scale up of Transmembrane NADH Oxidation in Synthetic Giant Vesicles. Bioconjugate Chemistry 32 (5), pp. 897 - 903 (2021)

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Wang, Z.; Song, Z.; Zhou, T.: Machine Learning for Ionic Liquid Toxicity Prediction. Processes 9 (1), 65 (2021)

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Wohlfromm, F.; Richter, M.; Otrin, L.; Seyrek, K.; Vidaković-Koch, T.; Kuligina, E.; Richter, V.; Koval, O.; Lavrik, I. N.: Interplay Between Mitophagy and Apoptosis Defines a Cell Fate Upon Co-treatment of Breast Cancer Cells With a Recombinant Fragment of Human κ-Casein and Tumor Necrosis Factor-Related Apoptosis-Inducing Ligand. Frontiers in Cell and Developmental Biology 8, 617762 (2021)

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Wünsche, S.; Yuan, L.; Seidel-Morgenstern, A.; Lorenz, H.: A Contribution to the Solid State Forms of Bis(demethoxy)curcumin: Co-Crystal Screening and Characterization. Molecules 26, 720 (2021)

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Zafar, S.; Perveen, S.; Cheema, A.; Qamar, S.: Analysis of temperature variations in fixed-bed columns using non-isothermal and non-equilibrium transport model. Thermal Science 25 (5 Part B), pp. 3857 - 3871 (2021)

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Zhang, X.; Ding, X.; Song, Z.; Zhou, T.; Sundmacher, K.: Integrated Ionic Liquid and Rate‐Based Absorption Process Design for Gas Separation: Global Optimization Using Hybrid Models. AIChE Journal 67 (10), 17340 (2021)

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Zhou, T.; Gani, R.; Sundmacher, K.: Hybrid data-driven and mechanistic modeling approaches for multiscale material and process design. Engineering 7 (9), pp. 1231 - 1238 (2021)

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2020

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Aliyev, N.; Benner, P.; Mengi, E.; Voigt, M.: A Subspace Framework for H_∞-Norm Minimization. SIAM Journal on Matrix Analysis and Applications 41 (2), pp. 928 - 956 (2020)

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Altaf, H.; Vorhauer, N.; Tsotsas, E.; Vidaković-Koch, T.: Steady-State Water Drainage by Oxygen in Anodic Porous Transport Layer of Electrolyzers: A 2D Pore Network Study. Processes 8, 362 (2020)

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Alvarado Perea, L.; Colín Luna, J. A.; López Gaona, A.; Wolff, T.; Pacheco Sosa, J. G.; García Martínez, J. C.: Simultaneous adsorption of quinoline and dibenzothiophene over Ni-based mesoporous materials at different Si/Al ratio. Catalysis Today 353, pp. 26 - 38 (2020)

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Bechtel, S.; Bayer, B.; Vidaković-Koch, T.; Wiser, A.; Vogel, H.; Sundmacher, K.: Precise determination of LJ parameters and Eucken correction factors for a more accurate modeling of transport properties in gases. Heat and Mass Transfer 56 (8), pp. 2515 - 2527 (2020)

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Bechtel, S.; Vidaković-Koch, T.; Weber, A. Z.; Sundmacher, K.: Model-Based Analysis of the Limiting Mechanisms in the Gas-Phase Oxidation of HCl Employing an Oxygen Depolarized Cathode. Journal of the Electrochemical Society 167, 013537 (2020)

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Bekiaris, P. S.; Klamt, S.: Automatic construction of metabolic models with enzyme constraints. BMC Bioinformatics 21, 19 (2020)

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Benner, P.; Breiten, T.; Hartmann, C.; Schmidt, B.: Model Reduction of Controlled Fokker-Planck and Liouville-von Neumann Equations. Journal of Computational Dynamics 7 (1), pp. 1 - 33 (2020)

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Benner, P.; Bujanović, Z.; Kürschner, P.; Saak, J.: A Numerical Comparison of Different Solvers for Large-Scale, Continuous-Time Algebraic Riccati Equations and LQR Problems. SIAM Journal on Scientific Computing 42 (2), pp. A957 - A996 (2020)

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Benner, P.; Dolgov, S.; Onwunta, A.; Stoll, M.: Low-Rank Solution of an Optimal Control Problem constrained by Random Navier-Stokes Equations. International Journal for Numerical Methods in Fluids 92 (11), pp. 1653 - 1678 (2020)

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Benner, P.; Du, X.; Yang, G.; Ye, D.: Balanced Truncation of Linear Time-Invariant Systems over Finite-Frequency Ranges. Advances in Computational Mathematics 46, 82, 34 pages (2020)

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Benner, P.; Goyal, P. K.; Kramer, B.; Peherstorfer, B.; Willcox, K.: Operator Inference for Non-Intrusive Model Reduction of Systems with Non-Polynomial Nonlinear Terms. Computer Methods in Applied Mechanics and Engineering 372, 113433, 17 pages (2020)

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