MPG.PuRe Contact at MPI Magdeburg

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Kristina Reinhold
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OA Publications at MPI Magdeburg

Open Access Publications at MPI Magdeburg

Journal Article (250)

  1. 1.
    Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnology and Bioengineering 115 (1), pp. 156 - 164 (2018)
  2. 2.
    Rexer, T.; Schildbach, A.; Klapproth, J.; Schierhorn, A.; Mahour, R.; Pietzsch, M.; Rapp, E.; Reichl, U.: One pot synthesis of GDP-mannose by a multi-enzyme cascade for enzymatic assembly of lipid-linked oligosaccharides. Biotechnology and Bioengineering 115 (1), pp. 192 - 205 (2018)
  3. 3.
    Abeln, M.; Borst, K. M.; Cajic, S.; Thiesler, H.; Kats, E.; Albers, I.; Kuhn, M.; Kaever, V.; Rapp, E.; Münster-Kühnel, A. et al.; Weinhold, B.: Sialylation Is Dispensable for Early Murine Embryonic Development in Vitro. ChemBioChem: A European Journal of Chemical Biology 18 (13), pp. 1305 - 1306 (2017)
  4. 4.
    Ahmad, M. I.; Szyld, D. B.; van Gijzen, M. B.: Preconditioned Multishift BiCG for H2-Optimal Model Reduction. SIAM Journal on Matrix Analysis and Applications 38 (2), pp. 401 - 424 (2017)
  5. 5.
    Aliyev, N.; Benner, P.; Mengi, E.; Schwerdtner, P.; Voigt, M.: Large-Scale Computation of L-Norms by a Greedy Subspace Method. SIAM Journal on Matrix Analysis and Applications 38 (4), pp. 1496 - 1516 (2017)
  6. 6.
    Altmann, R.; Heiland, J.: Simulation of Multibody Systems With Servo Constraints Through Optimal Control. Multibody System Dynamics 40 (1), pp. 75 - 98 (2017)
  7. 7.
    Benner, P.; Denißen, J.; Kohaupt, L.: Trigonometric Spline and Spectral Bounds for the Solution of Linear Time-Periodic Systems. Journal of Applied Mathematics and Computing 54 (1), pp. 127 - 157 (2017)
  8. 8.
    Benner, P.; Yücel, H.: Adaptive Symmetric Interior Penalty Galerkin Method for Boundary Control Problems. SIAM Journal on Numerical Analysis 55 (2), pp. 1101 - 1133 (2017)
  9. 9.
    Bremer, J.; Rätze, K.; Sundmacher, K.: CO2 Methanation: Optimal Start-Up Control of a Fixed-Bed Reactor for Power-To-Gas Applications. AIChE-Journal 63 (1), pp. 23 - 31 (2017)
  10. 10.
    Buchholz, H. K.; Hylton, R. K.; Brandenburg, J. G.; Seidel-Morgenstern, A.; Lorenz, H.; Stein, M.; Price, S. L.: Thermochemistry of racemic and enantiopure molecular crystals for predicting enantiomer separation. Crystal Growth & Design 17 (9), pp. 4676 - 4686 (2017)
  11. 11.
    Chen, J.; Grundel, S.; Yu, T. P. Y.: A Flexible C2 Subdivision Scheme on the Sphere: With Application to Biomembrane Modelling. SIAM Journal on Applied Algebra and Geometry 1 (1), pp. 459 - 483 (2017)
  12. 12.
    Dolgov, S.; Stoll, M.: Low-Rank Solution to an Optimization Problem Constrained by the Navier-Stokes Equations. SIAM Journal on Scientific Computing 39 (1), pp. A255 - A280 (2017)
  13. 13.
    Edler, E.; Stein, M.: Probing the druggability of membrane-bound Rab5 by molecular dynamics simulations. Journal of Enzyme Inhibition and Medicinal Chemistry 32 (1), pp. 434 - 443 (2017)
  14. 14.
    Eisenschmidt, H.; Soumaya, M.; Bajcinca, N.; Le Borne, S.; Sundmacher, K.: Estimation of aggregation kernels based on Laurent polynomial approximation. Computers and Chemical Engineering 103, pp. 210 - 217 (2017)
  15. 15.
    Guglielmi, N.; Gürbüzbalaban, M.; Mitchell, T.; Overton, M. L.: Approximating the Real Structured Stability Radius with Frobenius Norm Bounded Perturbations. SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS 38 (4), pp. 1323 - 1353 (2017)
  16. 16.
    Hädicke, O.; Klamt, S.: EColiCore2: a reference model of the central metabolism of Escherichia coli and the relationships to its genome-scale parent model. Scientific Reports 7, 39647 (2017)
  17. 17.
    Kamp von, A.; Thiele, S.; Hädicke, O.; Klamt, S.: Use of CellNetAnalyzer in biotechnology and metabolic engineering. Journal of Biotechnology 261, pp. 221 - 228 (2017)
  18. 18.
    Kamp von, A.; Klamt, S.: Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms. Nature Communications 8, 15926 (2017)
  19. 19.
    Kerst, K.; Roloff, C.; Medeiros de Souza, L. G.; Bartz, A.; Seidel-Morgenstern, A.; Thévenin, D.; Janiga, G.: CFD-DEM simulations of a fluidized bed crystallizer. Chemical Engineering Science 165, pp. 1 - 13 (2017)
  20. 20.
    Klamt, S.; Regensburger, G.; Gerstl, P.M.; Jungreuthmayer, C.; Schuster, S.; Mahadevan, R.; Zanghellini, J.; Müller, S.: From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Computational Biology 13 (4), e1005409 (2017)
  21. 21.
    Kohls, E.; Stein, M.: Vibrational scaling factors for RH(I) carbonyl compounds in homogeneous cataylsis. Contributions. Section of Natural, Mathematical & Biotechnical Sciences 38 (1), pp. 43 - 56 (2017)
  22. 22.
    Kohls, E.; Stein, M.: The thermochemistry of long chain olefin isomers during hydroformylation. New Journal of Chemistry 41 (15), pp. 7347 - 7355 (2017)
  23. 23.
    Kotelnikova, E. N.; Isakov, A. I.; Lorenz, H.: Non-equimolar discrete compounds in binary chiral systems of organic substances. CrystEngComm 19 (14), pp. 1851 - 1869 (2017)
  24. 24.
    Liu, Y.; McBride, R.; Stoll, M.; Palma, A. S.; Silva, L.; Agravat, S.; Aoki-Kinoshita, K. F.; Campbell, M. P.; Costello, C. E.; Dell, A. et al.; Haslam, S. M.; Karlsson, N. G.; Khoo, K.-H.; Kolarich, D.; Novotny, M. V.; Packer, N. H.; Ranzinger, R.; Rapp, E.; Rudd, P. M.; Struwe, W. B.; Tiemeyer, M.; Wells, L.; York, W. S.; Zaia, J.; Kettner, C.; Paulson, J. C.; Feizi, T.; Smith, D. F.: The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. Glycobiology 27 (4), pp. 280 - 284 (2017)
  25. 25.
    Natarajan, M.; Faujdar, H.; Mobin, S. M.; Stein, M.; Kaur-Ghumaan, S.: A mononuclear iron carbonyl complex [Fe(μ-bdt)(CO)2(PTA)2] with bulky phosphine ligands: a model for the [FeFe] hydrogenase enzyme active site with an inverted redox potential. Dalton Transactions 46 (30), pp. 10050 - 10056 (2017)
  26. 26.
    Petrenko, A.; Stein, M.: Distal [FeS]-Cluster Coordination in [NiFe]-Hydrogenase Facilitates Intermolecular Electron Transfer. International Journal of Molecular Sciences 18 (1), 100 (2017)
  27. 27.
    Pralow, A.; Hoffmann, M.; Nguyen-Khuong, T.; Rapp, E.; Reichl, U.: Improvement of the glycoproteomic toolbox with the discovery of a unique C-terminal cleavage specificity of flavastacin for N-glycosylated asparagine. Scientific Reports 7, 11419 (2017)
  28. 28.
    Prigent, S.; Frioux, C.; Dittami, S. M.; Thiele, S.; Larhlimi, A.; Collet, G.; Gutknecht, F.; Got, J.; Eveillard, D.; Bourdon, J. et al.; Plewniak, F.; Tonon, T.; Siegel, A.: Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology 13, e1005276 (2017)
  29. 29.
    Ricken, B.; Kolvenbach, B. A.; Bergesch, C.; Benndorf, D.; Kroll, K.; Strnad, H.; Vlcek, C.; Adaixo, R.; Hammes, F.; Shahgaldian, P. et al.; Schäffer, A.; Kohler, H.-P. E.; Corvini , P. F.-X.: FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics. Scientific Reports 7, 15783 (2017)
  30. 30.
    Rihko-Struckmann, L.; Molnar, M.; Pirwitz, K.; Fachet, M.; McBride, K.; Zinser, A.; Sundmacher, K.: Recovery and Separation of Carbohydrate Derivatives from the Lipid Extracted Alga Dunaliella by Mild Liquefaction. ACS Sustainable Chemistry & Engineering 5 (1), pp. 588 - 595 (2017)
  31. 31.
    Salmas, R. E.; Stein, M.; Yurtsever, M.; Seeman, P.; Erol, I.; Mestanoglu, M.; Durdagi, S.: The signaling pathway of dopamine D2 receptor (D2R) activation using normal mode analysis (NMA) and the construction of pharmacophore models for D2R ligands. Journal of Biomolecular Structure and Dynamics 35 (9), pp. 2040 - 2048 (2017)
  32. 32.
    Schiffer, J.; Hans, C. A.; Kral, T.; Ortega, R.; Raisch, J.: Modelling, Analysis and Experimental Validation of Clock Drift Effects in Low-Inertia Power Systems. IEEE Transactions on Industrial Electronics 64 (7), pp. 5942 - 5951 (2017)
  33. 33.
    Seel, T.; Schauer, T.; Raisch, J.: Monotonic Convergence of Iterative Learning Control Systems with Variable Pass Length. International Journal of Control 90 (3), pp. 393 - 406 (2017)
  34. 34.
    Straube, R.; Shah, M.; Flockerzi, D.; Wolf, D.A.: Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire. PLoS Computational Biology 13 (11), e1005869 (2017)
  35. 35.
    Tapia, F.; Jordan, I.; Genzel, Y.; Reichl, U.: Efficient and stable production of Modified Vaccinia Ankara virus in two-stage semi-continuous and in continuous stirred tank cultivation systems. PLoS One 12 (8), e0182553 (2017)
  36. 36.
    Zhang, J.; Qin, L.; Peng, D.; Zhou, T.; Cheng, H.; Chen, L.; Qi, Z.: COSMO-descriptor based computer-aided ionic liquid design for separation processes: Part II: Task-specific design for extraction processes. Chemical Engineering Science 162, pp. 364 - 374 (2017)
  37. 37.
    Ahmad, M. I.; Benner, P.; Jaimoukha, I. M.: Krylov Subspace Methods for Model Reduction of Quadratic-Bilinear Systems. IET Control Theory & Applications 10 (16), pp. 2010 - 2018 (2016)
  38. 38.
    Benner, P.; Kürschner, P.; Tomljanović, Z.; Truhar, N.: Semi-Active Damping Optimization of Vibrational Systems using the Parametric Dominant Pole Algorithm. Zeitschrift für Angewandte Mathematik und Mechanik 96 (5), pp. 604 - 619 (2016)
  39. 39.
    Benner, P.; Sima, V.; Voigt, M.: Algorithm 961 - FORTRAN 77 Subroutines for the Solution of Skew-Hamiltonian/Hamiltonian Eigenproblems. ACM Transactions on Mathematical Software 42 (3), 24 (2016)
  40. 40.
    Benner, P.; Kürschner, P.; Saak, J.: Frequency-Limited Balanced Truncation with Low-Rank Approximations. SIAM Journal on Scientific Computing 38 (1), pp. A471 - A499 (2016)
  41. 41.
    Benner, P.; Onwunta, A.; Stoll, M.: Block-diagonal Preconditioning for Optimal Control Problems Constrained by PDEs with Uncertain Inputs. SIAM Journal on Matrix Analysis and Applications 37 (2), pp. 491 - 518 (2016)
  42. 42.
    Benner, P.; Saak, J.; Uddin, M. M.: Structure Preserving Model Order Reduction of Large Sparse Second-Order Index-1 Systems and Application to a Mechatronics Model. Mathematical and Computer Modelling of Dynamical Systems 22 (6), pp. 509 - 523 (2016)
  43. 43.
    Bordron, P.; Latorre, M.; Cortés, M.-P.; González, M.; Thiele, S.; Siegel, A.; Maass, A.; Eveillard, D.: Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. MicrobiologyOpen 5 (1), pp. 106 - 117 (2016)
  44. 44.
    Breiten, T.; Simoncini, V.; Stoll, M.: Low-Rank Solvers for Fractional Differential Equations. Electronic Transactions on Numerical Analysis 45, pp. 107 - 132 (2016)
  45. 45.
    Buchholz, H. K.; Emel'yanenko, V. N.; Lorenz, H.; Verevkin, S. P.: An Examination of the Phase Transition Thermodynamics of (S)- and (RS)-Naproxen as a Basis for the Design of Enantioselective Crystallization Processes. European Journal of Pharmaceutical Sciences 105 (5), pp. 1676 - 1683 (2016)
  46. 46.
    Cammann, C.; Rath, A.; Reichl, U.; Lingel, H.; Brunner-Weintierl, M.; Simeoni, L.; Schraven, B.; Lindquist, J. A.: Early changes in the metabolic profile of activated CD8+ T cells. BMC Biology 17 (1), 28 (2016)
  47. 47.
    Dolgov, S.; Pearson, J. W.; Savostyanov, D. V.; Stoll, M.: Fast tensor product solvers for optimization problems with fractional differential equations as constraints. Applied Mathematics and Computation 273, pp. 604 - 623 (2016)
  48. 48.
    Fachet, M.; Hermsdorf, D.; Rihko-Struckmann, L.; Sundmacher, K.: Flow cytometry enables dynamic tracking of algal stress response: A case study using carotenogenesis in Dunaliella salina. Algal Research (13), pp. 227 - 234 (2016)
  49. 49.
    Fehr, J.; Heiland, J.; Himpe, C.; Saak, J.: Best Practices for Replicability, Reproducibility and Reusability of Computer-based Experiments exemplified by Model Reduction Software. AIMS Mathematics 1 (3), pp. 261 - 281 (2016)
  50. 50.
    Feng, L.; Yue, Y.; Banagaaya, N.; Meuris, P.; Schoenmaker, W.; Benner, P.: Parametric Modeling and Model Order Reduction for (Electro-)Thermal Analysis of Nanoelectronic Structures. Journal of Mathematics in Industry 6 (1), 10 (2016)
 
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