Max_Planck_Institute_for_Dynamics_of_Complex_Technical_Systems

Journal Article

Ricken, B.; Kolvenbach, B. A.; Bergesch, C.; Benndorf, D.; Kroll, K.; Strnad, H.; Vlcek, C.; Adaixo, R.; Hammes, F.; Shahgaldian, P. et al.; Schäffer, A.; Kohler, H.-P. E.; Corvini , P. F.-X.: FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics. Scientific Reports 7, 15783 (2017)

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Rihko-Struckmann, L.; Molnar, M.; Pirwitz, K.; Fachet, M.; McBride, K.; Zinser, A.; Sundmacher, K.: Recovery and Separation of Carbohydrate Derivatives from the Lipid Extracted Alga Dunaliella by Mild Liquefaction. ACS Sustainable Chemistry & Engineering 5 (1), pp. 588 - 595 (2017)

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Salmas, R. E.; Seeman, P.; Aksoydan, B.; Erol, I.; Kantarcioglu, I.; Stein, M.; Yurtsever, M.; Durdagi, S.: Analysis of the Glutamate Agonist LY404,039 Binding to Nonstatic Dopamine Receptor D2 Dimer Structures and Consensus Docking. ACS Chemical Neuroscience 8 (6), pp. 1404 - 1415 (2017)

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Salmas, R. E.; Stein, M.; Yurtsever, M.; Seeman, P.; Erol, I.; Mestanoglu, M.; Durdagi, S.: The signaling pathway of dopamine D2 receptor (D2R) activation using normal mode analysis (NMA) and the construction of pharmacophore models for D2R ligands. Journal of Biomolecular Structure and Dynamics 35 (9), pp. 2040 - 2048 (2017)

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Schiffer, J.; Hans, C. A.; Kral, T.; Ortega, R.; Raisch, J.: Modeling, Analysis and Experimental Validation of Clock Drift Effects in Low-Inertia Power Systems. IEEE Transactions on Industrial Electronics 64 (7), pp. 5942 - 5951 (2017)

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Seel, T.; Schauer, T.; Raisch, J.: Monotonic Convergence of Iterative Learning Control Systems with Variable Pass Length. International Journal of Control 90 (3), pp. 393 - 406 (2017)

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Journal Article

Sorrentino, A.; Vidaković-Koch, T.; Hanke-Rauschenbach, R.; Sundmacher, K.: Concentration-alternating frequency response: A new method for studying polymer electrolyte membrane fuel cell dynamics. Electrochimica Acta 243, pp. 53 - 64 (2017)

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Straube, R.: Analysis of network motifs in cellular regulation: Structural similarities, input–output relations and signal integration. Biosystems 162, pp. 2015 - 232 (2017)

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Straube, R.; Shah, M.; Flockerzi, D.; Wolf, D.A.: Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire. PLoS Computational Biology 13 (11), e1005869 (2017)

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Tapia, F.; Jordan, I.; Genzel, Y.; Reichl, U.: Efficient and stable production of Modified Vaccinia Ankara virus in two-stage semi-continuous and in continuous stirred tank cultivation systems. PLoS One 12 (8), e0182553 (2017)

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Journal Article

Wenzel, M.; Aditya Dharanipragada, N. V. R.; Galvita, V.; Poelman , H.; Marin, G. B.; Rihko-Struckmann, L.; Sundmacher, K.: CO production from CO₂ via reverse water–gas shift reaction performed in a chemical looping mode: Kinetics on modified iron oxide. Journal of CO₂ Utilization 17, pp. 60 - 68 (2017)

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Journal Article

Wenzel, M.; Rihko-Struckmann, L.; Sundmacher, K.: Thermodynamic Analysis and Optimization of RWGS Processes for Solar Syngas Production from CO2. AIChE-Journal 63 (1), pp. 15 - 22 (2017)

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Journal Article

Wiedmeyer, V.; Anker, F.; Bartsch, C.; Voigt, A.; John, V.; Sundmacher, K.: Continuous Crystallization in a Helically Coiled Flow Tube: Analysis of Flow Field, Residence Time Behavior, and Crystal Growth. Industrial and Engineering Chemistry Research 56 (13), pp. 3699 - 3712 (2017)

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Journal Article

Wiedmeyer, V.; Voigt, A.; Sundmacher, K.: Crystal Population Growth in a Continuous Helically Coiled Flow Tube Crystallizer. Chemical Engineering and Technology 40 (9), pp. 1584 - 1590 (2017)

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Journal Article

Yazdi, S.; Naumann, M.; Stein, M.: Double Phosphorylation-Induced Structural Changes in the Signal-Receiving Domain of IκBα in Complex with NF-κB. Proteins: Structure, Function, and Bioinformatics 85 (1), pp. 17 - 29 (2017)

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Journal Article

Zander, D.; Samaga, D.; Straube, R.; Bettenbrock, K.: Bistability and Nonmonotonic Induction of the lac Operon in the Natural Lactose Uptake System. Biophysical Journal 112 (9), pp. 1984 - 1996 (2017)

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Journal Article

Zhang, Y.; Feng, L.; Seidel-Morgenstern, A.; Benner, P.: Accelerating Optimization and Uncertainty Quantification of Nonlinear SMB Chromatography Using Reduced-Order Models. Computers & Chemical Engineering 96, pp. 237 - 247 (2017)

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Journal Article

Zhou, T.; Zhou, Y.; Sundmacher, K.: A hybrid stochastic-deterministic optimization approach for integrated solvent and process design. Chemical Engineering Science 159, pp. 207 - 2016 (2017)

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Zuyev, A.; Grushkovskaya, V.: Motion Planning for Control-Affine Systems Satisfying Low-Order Controllability Conditions. International Journal of Control 90 (11), pp. 2517 - 2537 (2017)

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Zuyev, A.; Seidel-Morgenstern, A.; Benner, P.: An Isoperimetric Optimal Control Problem for a Non-Isothermal Chemical Reactor with Periodic Inputs. Chemical Engineering Science 161, pp. 206 - 214 (2017)

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correspondence

2016

Journal Article

Ahmad, M. I.; Benner, P.; Jaimoukha, I. M.: Krylov Subspace Methods for Model Reduction of Quadratic-Bilinear Systems. IET Control Theory & Applications 10 (16), pp. 2010 - 2018 (2016)

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Journal Article

Benner, P.; Dolgov, S.; Onwunta, A.; Stoll, M.: Low-Rank Solvers for Unsteady Stokes-Brinkman Optimal Control Problem with Random Data. Computer Methods in Applied Mechanics and Engineering 304, pp. 26 - 54 (2016)

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Journal Article

Benner, P.; Goyal, P. K.: Multipoint Interpolation of Volterra Series and H₂-Model Reduction for a Family of Bilinear Descriptor Systems. Systems & Control Letters 97, pp. 1 - 11 (2016)

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Journal Article

Benner, P.; Kürschner, P.; Saak, J.: Frequency-Limited Balanced Truncation with Low-Rank Approximations. SIAM Journal on Scientific Computing 38 (1), pp. A471 - A499 (2016)

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Journal Article

Benner, P.; Kürschner, P.; Tomljanović, Z.; Truhar, N.: Semi-Active Damping Optimization of Vibrational Systems using the Parametric Dominant Pole Algorithm. Zeitschrift für Angewandte Mathematik und Mechanik 96 (5), pp. 604 - 619 (2016)

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Benner, P.; Onwunta, A.; Stoll, M.: Block-diagonal Preconditioning for Optimal Control Problems Constrained by PDEs with Uncertain Inputs. SIAM Journal on Matrix Analysis and Applications 37 (2), pp. 491 - 518 (2016)

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Journal Article

Benner, P.; Saak, J.; Uddin, M. M.: Structure Preserving Model Order Reduction of Large Sparse Second-Order Index-1 Systems and Application to a Mechatronics Model. Mathematical and Computer Modelling of Dynamical Systems 22 (6), pp. 509 - 523 (2016)

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Journal Article

Benner, P.; Sima, V.; Voigt, M.: Algorithm 961 - FORTRAN 77 Subroutines for the Solution of Skew-Hamiltonian/Hamiltonian Eigenproblems. ACM Transactions on Mathematical Software 42 (3), 24, 26 pages (2016)

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Journal Article

Bordron, P.; Latorre, M.; Cortés, M.-P.; González, M.; Thiele, S.; Siegel, A.; Maass, A.; Eveillard, D.: Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. MicrobiologyOpen 5 (1), pp. 106 - 117 (2016)

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Buchholz, H. K.; Emel'yanenko, V. N.; Lorenz, H.; Verevkin, S. P.: An Examination of the Phase Transition Thermodynamics of (S)- and (RS)-Naproxen as a Basis for the Design of Enantioselective Crystallization Processes. European Journal of Pharmaceutical Sciences 105 (5), pp. 1676 - 1683 (2016)

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Cammann, C.; Rath, A.; Reichl, U.; Lingel, H.; Brunner-Weintierl, M.; Simeoni, L.; Schraven, B.; Lindquist, J. A.: Early changes in the metabolic profile of activated CD8+ T cells. BMC Biology 17 (1), 28 (2016)

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Journal Article

Dolgov, S.; Pearson, J. W.; Savostyanov, D. V.; Stoll, M.: Fast tensor product solvers for optimization problems with fractional differential equations as constraints. Applied Mathematics and Computation 273, pp. 604 - 623 (2016)

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Journal Article

Fachet, M.; Hermsdorf, D.; Rihko-Struckmann, L.; Sundmacher, K.: Flow cytometry enables dynamic tracking of algal stress response: A case study using carotenogenesis in Dunaliella salina. Algal Research (13), pp. 227 - 234 (2016)

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Journal Article

Fehr, J.; Heiland, J.; Himpe, C.; Saak, J.: Best Practices for Replicability, Reproducibility and Reusability of Computer-based Experiments exemplified by Model Reduction Software. AIMS Mathematics 1 (3), pp. 261 - 281 (2016)

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Journal Article

Feng, L.; Yue, Y.; Banagaaya, N.; Meuris, P.; Schoenmaker, W.; Benner, P.: Parametric Modeling and Model Order Reduction for (Electro-)Thermal Analysis of Nanoelectronic Structures. Journal of Mathematics in Industry 6 (1), 10, 16 pages (2016)

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Journal Article

Flassig, R.; Fachet, M.; Höffner, K.; Barton, P. I.; Sundmacher, K.: Dynamic flux balance modeling to increase the production of high-value compounds in green microalgae. Biotechnology for Biofuels 9 (165), pp. 1 - 12 (2016)

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Journal Article

Frensing, T.; Kupke, S. Y.; Bachmann, M.; Fritzsche, S.; Gallo Ramirez, L. E.; Reichl, U.: Influenza virus intracellular replication dynamics, release kinetics, and particle morphology during propagation in MDCK cells. Applied Microbiology and Biotechnology 100 (16), pp. 7181 - 7192 (2016)

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Journal Article

Gao, K.; Yang, J.; Seidel-Morgenstern, A.; Hamel, C.: Methane Dehydro-Aromatization: Potential of a Mo/MCM-22 Catalyst and Hydrogene-Selective Membranes. Chemie-Ingenieur-Technik 88 (1-2), pp. 168 - 176 (2016)

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Journal Article

Gerstl, M. P.; Klamt, S.; Jungreuthmayer, C.; Zanghellini, J.: Exact quantification of cellular robustness in genome-scale metabolic networks. Bioinformatics 32 (5), pp. 730 - 737 (2016)

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Journal Article

Heiland, J.: A Differential-Algebraic Riccati Equation for Applications in Flow Control. SIAM Journal on Control and Optimization 54 (2), pp. 718 - 739 (2016)

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Journal Article

Hennig, R.; Cajic, S.; Borowiak, M.; Hoffmann, M.; Kottler, R.; Reichl, U.; Rapp, E.: Towards personalized diagnostics via longitudinal study of the human plasma N-glycome. Biochimica et Biophysica Acta (BBA) - General Subjects 1860 (8), pp. 1728 - 1738 (2016)

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Journal Article

Heyer, R.; Benndorf, D.; Kohrs, F.; De Vrieze, J.; Boon, N.; Hoffmann, M.; Rapp, E.; Schlüter, A.; Sczyrba, A.; Reichl, U.: Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type. Biotechnology for Biofuels 9 (9), 155 (2016)

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Journal Article

Hoffmann, M.; Marx, K.; Reichl, U.; Wuhrer, M.; Rapp, E.: Site-specific O-Glycosylation Analysis of Human Blood Plasma Proteins. Molecular and Cellular Proteomics 15 (2), pp. 624 - 641 (2016)

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Journal Article

Khandavilli, U. B. R.; Lusi, M.; Bhogala, B. R.; Maguire, A. R.; Stein, M.; Lawrence, S. E.: Diversity in a simple co-crystal: racemic and kryptoracemic behaviour. Chemical Communications 2016 (52), pp. 8309 - 8312 (2016)

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Journal Article

Kiedorf, G.; Wolff, T.; Seidel-Morgenstern, A.; Hamel, C.: Kinetic Analysis of the Hydrocarbon Total Oxidation Using Individually Measured Adsorption Isotherms. Chemie-Ingenieur-Technik 88 (11), pp. 1746 - 1760 (2016)

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Journal Article

Kiwala, D.; Olbrycht, M.; Balawejder, M.; Piatkowski, W.; Seidel-Morgenstern, A.; Antos, D.: Separation of Stereoisomeric Mixtures of Nafronyl as a Representative of Compounds Possessing Two Stereogenic Centers By Coupling Crystallization, Diastereoisomeric Conversion and Chromatography. Organic Process Research & Development 20 (3), pp. 615 - 625 (2016)

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Journal Article

Koch, S.; Benndorf, D.; Fronk, K.; Reichl, U.; Klamt, S.: Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process. Biotechnology for Biofuels 9, 17 (2016)

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Köhler, M.; Penke, C.; Saak, J.; Ezzatti, P.: Energy-Aware Solution of Linear Systems with Many Right Hand Sides. Computer Science - Research and Development 31 (4), pp. 215 - 235 (2016)

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Journal Article

Kolczyk, K.; Conradi, C.: Challenges in horizontal model integration. BMC Systems Biology (10), 28 (2016)

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