Publications of Steffen Klamt

Espinel-Rios, S., Bettenbrock, K., Klamt, S., Avalos, J. L., & Findeisen, R. (2023)Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communitiesIn: 33rd European Symposium on Computer Aided Chemical Engineering, 2601–2606doi: 10.1016/B978-0-443-15274-0.50413-3.

Espinel-Rios, S., Kok, R., Klamt, S., Avalos, J. L., & Findeisen, R. (2023)Batch-to-Batch Optimization with Model Adaptation Leveraging Gaussian Processes: The Case of Optogenetically Assisted Microbial ConsortiaIn: International Conference on Control, Automation and Systems, 1292–1297doi: 10.23919/ICCAS59377.2023.10316811.

Espinel-Rios, S., Slaviero, G., Bettenbrock, K., Klamt, S., & Findeisen, R. (2023)Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modelingIn: IFAC-PapersOnLine, 4608–4613doi: 10.1016/j.ifacol.2023.10.968.

Espinel-Rios, S., Huber, N., Alcalá Orozco, E. A., Morabito, B., Rexer, T., Reichl, U., Klamt, S., & Findeisen, R. (2022)Cell-free biosynthesis meets dynamic optimization and control: a fed-batch frameworkIn: IFAC-PapersOnLine, 92–97doi: 10.1016/j.ifacol.2023.01.021.

Espinel-Rios, S., Morabito , B., Pohlodek, J., Bettenbrock, K., Klamt, S., & Findeisen, R. (2022)Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentationsIn: IFAC-PapersOnLine, 174–180doi: 10.1016/j.ifacol.2022.07.440.

Slaviero, G., Steuer, R., & Klamt, S. (2022)Using parameter sampling to explore key properties of E. coli's anaerobic metabolismIn: IFAC-PapersOnLine, 109–114doi: 10.1016/j.ifacol.2023.01.024.

Hädicke, O., Pozzi, R., Witt, A., Oldiges, M., Klamt, S., & Grammel, H. (2016)Systembiologische Untersuchung bakterieller Stoffwechselnetzwerke und Enzyme für die technische Verwertung von COIn: Technische Systeme für die Lebenswissenschaften, 115–122.

Ryll, A., Bucher, J., Niklas , J., & Klamt, S. (2013)A fusion approach linking signaling logic and metabolic mass-flow kinetics in hepatocytesIn: Computational Methods in Systems Biology: 11th International Conference, CMSB 2013, 255–256.

Bohl, K., Figueiredo, L. F., Hädicke, O., Klamt, S., Kost, C., Schuster, S., & Kaleta, C. (2010)CASOP GS: Computing intervention strategies targeted at production improvement in genome-scale metabolic networksIn: German Conference on Bioinformatics 2010, 71–80.

Klamt, S., Kremling, A., & Gilles, E. D. (2001)FluxAnalyzer: a graphical user interface for stoichiometric and quantitative analysis of metabolic networksIn: IFAC Proceedings Volumes, 119–124doi: 10.1016/S1474-6670(17)34206-4.

Alcalá Orozco, E. A., Huber, N., Klamt, S., Rexer, T., & Reichl, U.A cell-free enzymatic cascade for the synthesis of GDP-fucose - modeling and optimizationPresented at: 6^th MECP (Multistep Enzyme Catalyzed Processes) CongressVienna (Austria), April 14, 2024.

Alcalá Orozco, E. A., Huber, N., Klamt, S., Rexer, T., & Reichl, U.Development of a cell-free enzymatic cascade for the synthesis of GDP-fucose - modeling and optimizationPresented at: GlycoBioTec 2023Berlin, Germany, January 16, 2023.

Alcalá Orozco, E. A., Huber, N., Klamt, S., Rexer, T., & Reichl, U.A cell-free enzymatic cascade for the synthesis of GDP-fucose - modeling and optimizationPresented at: 3^rd Japan-Switzerland-Germany Workshop on Biocatalysis and Bioprocess Development Aichi (Japan), September 10, 2023.

Espinel-Rios, S., Bettenbrock, K., Klamt, S., Avalos, J. L., & Findeisen, R.Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communitiesPresented at: 33rd European Symposium on Computer-Aided Process Engineering (ESCAPE-33)Athens, Greece, June 18, 2023.

Espinel-Rios, S., Slaviero, G., Bettenbrock, K., Klamt, S., & Findeisen, R.Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modelingPresented at: IFAC World Congress 2023Yokohama, Japan, July 9, 2023.

Espinel-Rios, S., Morabito , B., Pohlodek, J., Bettenbrock, K., Klamt, S., & Findeisen, R.Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentationsPresented at: 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022Busan, Korea, June 14, 2022.

Huber, N., Alcalá Orozco, E. A., Rexer, T., Reichl, U., & Klamt, S.Dynamic Modeling and Optimization of a Cell-free Enzymatic Cascade for the Production of GDP-FucosePresented at: ISGSB2022 ConferenceInnsbruck, Austria, September 19, 2022.

Harder, B.-J., Bettenbrock, K., & Klamt, S.Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid productionPresented at: Himmelfahrtstagung "Models for Developing and Optimising Biotech Production"Neu-Ulm, Germany, May 22, 2017.

Harder, B.-J., Bettenbrock, K., & Klamt, S.Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid productionPresented at: Systems Biology meets Synthetic BiologyFrankfurt am Main, Germany, May 2, 2017.

Harder, B.-J., Bettenbrock, K., & Klamt, S.Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid productionPresented at: Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM)Jena, Germany, March 13, 2016.