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Journal Article (7)

  1. 2011
    Journal Article
    Marwan, W.; Wagler, A.; Weismantel, R.: Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks. Natural Computing 10 (2), pp. 639 - 654 (2011)
  2. 2010
    Journal Article
    Barrantes Bustinza, I. W.; Glockner, G.; Meyer, S.; Marwan, W.: Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum. BMC Genomics 11, 115 (2010)
  3. Journal Article
    Rohr, C.; Marwan, W.; Heiner, M.: Snoopy - a unifying Petri net framework to investigate biomolecular networks. Bioinformatics 26 (7), pp. 974 - 975 (2010)
  4. Journal Article
    Streif, S.; Oesterhelt, D.; Marwan, W.: A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis. BMC Systems Biology 4, 27 (2010)
  5. 2009
    Journal Article
    Streif, S.; Staudinger, W.; Oesterhelt, D.; Marwan, W.: Quantitative analysis of signal transduction in motile and phototactic cells by computerized light stimulation and model based tracking. Review of Scientific Instruments 80, 023709 (2009)
  6. 2008
    Journal Article
    Glöckner, G.; Golderer, G.; Werner-Felmayer, G.; Meyer, S.; Marwan, W.: A first glimpse at the transcriptome of Physarum polycephalum. BMC Genomics 9, 6 (2008)
  7. Journal Article
    Streif, S.; Staudinger, W.; Marwan, W.; Oesterhelt, D.: Flagellar Rotation in the Archaeon Halobacterium salinarum Depends on ATP. Journal of Molecular Biology 384 (1), pp. 1 - 8 (2008)

Book Chapter (1)

  1. 2015
    Book Chapter
    Blätke, M. A.; Heiner, M.; Marwan, W.: BioModel Engineering with Petri Nets. In: Algebraic and Discrete Mathematical Methods for Modern Biology, pp. 141 - 192. Elsevier, San Diego, USA (2015)

Conference Paper (3)

  1. 2011
    Conference Paper
    Blätke, M. A.; Meyer, S.; Marwan, W.: Pain Signaling - A Case Study of the Modular Modeling Voncept with Prospect to a Protein-Oriented Modeling Platform. In: Proceedings of the International Workshop on Biological Processes & Petri Nets, Vol. 724, pp. 117 - 134 (Eds. Heiner, M.; Hiroshi, M.). International Workshop on Biological Processes & Petri Nets (BioPPN-2011), Newcastle upon Tyne, UK, June 20, 2011 - June 24, 2011. (2011)
  2. 2010
    Conference Paper
    Blätke, M. A.; Marwan, W.: Modular and hierarchical modelling concept for large biological Petri nets applied to nociception. In: Proceedings of the 17th German Workshop on Algorithms and Tools for Petri Nets, Vol. 643, pp. 42 - 50 (Eds. Schwarick, M.; Heiner, M.). 17th German Workshop on Algorithms and Tools for Petri Nets (AWPN 2010), Cottbus, October 07, 2010 - October 08, 2010. (2010)
  3. 2004
    Conference Paper
    Nutsch, T.; Marwan, W.; Oesterhelt, D.; Gilles, E. D.: A coherent kinetic model of sensing and response in halobacterium salinarium phototaxis based on the mechanism of flagellar motor switching. In: Bioinformatics of genome regulation and structure, pp. 113 - 116. The Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004), Novosibirsk, Russia, July 25, 2004 - July 30, 2004. (2004)

Poster (1)

  1. 2008
    Rohr, C.; Heiner, M.; Marwan, W.: Petri net modeling of cellular signal transduction based on a stochastic version of Snoopy. The 6th Conference on Computational Methods in Systems Biology, Rostock, Germany (2008)
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