Open Access Publications at MPI Magdeburg

Max Planck Institute for Dynamics of Complex Technical Systems

Journal Article (1094)

2017

Journal Article

Klamt, S.; Regensburger, G.; Gerstl, P.M.; Jungreuthmayer, C.; Schuster, S.; Mahadevan, R.; Zanghellini, J.; Müller, S.: From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Computational Biology 13 (4), e1005409 (2017)

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Kohls, E.; Stein, M.: Vibrational scaling factors for RH(I) carbonyl compounds in homogeneous cataylsis. Contributions: MASA, Section of Natural, Mathematical & Biotechnical Sciences 38 (1), pp. 43 - 56 (2017)

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Kohls, E.; Stein, M.: The thermochemistry of long chain olefin isomers during hydroformylation. New Journal of Chemistry 41 (15), pp. 7347 - 7355 (2017)

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Kohrs, F.; Heyer, R.; Bissinger, T.; Kottler, R.; Schallert, K.; Püttker, S.; Behne, A.; Rapp, E.; Benndorf, D.; Reichl, U.: Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community composition. Anaerobe 46, pp. 56 - 68 (2017)

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Konze, S. A.; Cajic, S.; Oberbeck, A.; Hennig, R.; Pich, A.; Rapp, E.; Buettner, F. F. R.: Quantitative Assessment of Sialo-Glycoproteins and N-Glycans during Cardiomyogenic Differentiation of Human Induced Pluripotent Stem Cells. ChemBioChem: A European Journal of Chemical Biology 18 (13), pp. 1317 - 1331 (2017)

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Kotelnikova, E. N.; Isakov, A. I.; Lorenz, H.: Non-equimolar discrete compounds in binary chiral systems of organic substances. CrystEngComm 19 (14), pp. 1851 - 1869 (2017)

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Kovačević, T.; Wiedmeyer, V.; Schock, J.; Voigt, A.; Pfeiffer, F.; Sundmacher, K.; Briesen, H.: Disorientation angle distribution of primary particles in potash alum aggregates. Journal of Crystal Growth 467, pp. 93 - 106 (2017)

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Lemberg, M.; Sadowski, G.; Gerlach, M.; Kohls, E.; Stein, M.; Hamel, C.; Seidel-Morgenstern, A.: Predicting Solvent Effects on the 1-dodecene Hydroformylation Reaction Equilibrium. AIChE-Journal 63 (10), pp. 4576 - 4585 (2017)

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Li, T.; Lorenz, H.; Seidel-Morgenstern, A.: Solubility Study and Thermal Stability Analysis of Calcium Propionate. Chemical Engineering and Technology 40 (7), pp. 1221 - 1230 (2017)

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Liu, Y.; McBride, R.; Stoll, M.; Palma, A. S.; Silva, L.; Agravat, S.; Aoki-Kinoshita, K. F.; Campbell, M. P.; Costello, C. E.; Dell, A. et al.; Haslam, S. M.; Karlsson, N. G.; Khoo, K.-H.; Kolarich, D.; Novotny, M. V.; Packer, N. H.; Ranzinger, R.; Rapp, E.; Rudd, P. M.; Struwe, W. B.; Tiemeyer, M.; Wells, L.; York, W. S.; Zaia, J.; Kettner, C.; Paulson, J. C.; Feizi, T.; Smith, D. F.: The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. Glycobiology 27 (4), pp. 280 - 284 (2017)

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Mangold, M.; Khlopov, D.; Temmel, E.; Lorenz, H.; Seidel-Morgenstern, A.: Modelling Geometrical and Fluid-Dynamic Aspects of a Continuous Fluidized Bed Crystallizer for Separation of Enantiomers. Chemical Engineering Science 160, pp. 281 - 290 (2017)

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McBride, K.; Kaiser, N. M.; Sundmacher, K.: Integrated Reaction-Extraction Process for the Hydroformylation of Long-Chain Alkenes with a Homogeneous Catalyst. Computers and Chemical Engineering 105, pp. 212 - 223 (2017)

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Natarajan, M.; Faujdar, H.; Mobin, S. M.; Stein, M.; Kaur-Ghumaan, S.: A mononuclear iron carbonyl complex [Fe(μ-bdt)(CO)₂(PTA)₂] with bulky phosphine ligands: a model for the [FeFe] hydrogenase enzyme active site with an inverted redox potential. Dalton Transactions 46 (30), pp. 10050 - 10056 (2017)

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Neugebauer, C.; Palis, S.; Bueck, A.; Tsotsas, E.; Heinrich, S.; Kienle, A.: A dynamic two-zone model of continuous fluidized bed layering granulation with internal product classification. Particuology 31, pp. 8 - 14 (2017)

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Otrin, L.; Marušič, N.; Bednarz, C.; Vidaković-Koch, T.; Lieberwirth, I.; Landfester, K.; Sundmacher, K.: Toward Artificial Mitochondrion: Mimicking Oxidative Phosphorylation in Polymer and Hybrid Membranes. Nano Letters 17 (11), pp. 6816 - 6821 (2017)

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Petrenko, A.; Stein, M.: Distal [FeS]-Cluster Coordination in [NiFe]-Hydrogenase Facilitates Intermolecular Electron Transfer. International Journal of Molecular Sciences 18 (1), 100 (2017)

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Pieler, M.; Heyse, A.; Wolff, M. W.; Reichl, U.: Specific ion effects on the particle size distributions of cell culture–derived influenza A virus particles within the Hofmeister series. Engineering in Life Sciences 17 (5), pp. 470 - 478 (2017)

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Pischel, D.; Sundmacher, K.; Flassig, R.: Efficient simulation of intrinsic, extrinsic and external noise in biochemical systems. Bioinformatics 33 (14), pp. i319 - i324 (2017)

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Pralow, A.; Hoffmann, M.; Nguyen-Khuong, T.; Rapp, E.; Reichl, U.: Improvement of the glycoproteomic toolbox with the discovery of a unique C-terminal cleavage specificity of flavastacin for N-glycosylated asparagine. Scientific Reports 7, 11419 (2017)

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Prigent, S.; Frioux, C.; Dittami, S. M.; Thiele, S.; Larhlimi, A.; Collet, G.; Gutknecht, F.; Got, J.; Eveillard, D.; Bourdon, J. et al.; Plewniak, F.; Tonon, T.; Siegel, A.: Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology 13, e1005276 (2017)

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Qamar, S.; Bashir, S.; Perveen, S.; Seidel-Morgenstern, A.: Analysis of Linear General Rate Model of Reactive Chromatography for Core−Shell Adsorbents. Industrial and Engineering Chemistry Research 56 (34), pp. 9657 - 9678 (2017)

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Qamar, S.; Bibi, S.; Akram, N.; Seidel-Morgenstern, A.: Analysis of Two-Component Non-Equilibrium Model of Linear Reactive Chromatography. Chromatographia 80 (3), pp. 383 - 400 (2017)

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Qamar, S.; Sattar, F. A.; Batool, I.; Seidel-Morgenstern, A.: Theoretical analysis of the influence of forced and inherent temperature fluctuations in an adiabatic chromatographic column. Chemical Engineering Science 161, pp. 249 - 264 (2017)

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Qamar, S.; Uche, D. U.; Khan, F. U.; Seidel-Morgenstern, A.: Analysis of linear two-dimensional general rate model for chromatographic columns of cylindrical geometry. Journal of Chromatography A 1496, pp. 92 - 104 (2017)

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Ricken, B.; Kolvenbach, B. A.; Bergesch, C.; Benndorf, D.; Kroll, K.; Strnad, H.; Vlcek, C.; Adaixo, R.; Hammes, F.; Shahgaldian, P. et al.; Schäffer, A.; Kohler, H.-P. E.; Corvini , P. F.-X.: FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics. Scientific Reports 7, 15783 (2017)

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Rihko-Struckmann, L.; Molnar, M.; Pirwitz, K.; Fachet, M.; McBride, K.; Zinser, A.; Sundmacher, K.: Recovery and Separation of Carbohydrate Derivatives from the Lipid Extracted Alga Dunaliella by Mild Liquefaction. ACS Sustainable Chemistry & Engineering 5 (1), pp. 588 - 595 (2017)

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Salmas, R. E.; Seeman, P.; Aksoydan, B.; Erol, I.; Kantarcioglu, I.; Stein, M.; Yurtsever, M.; Durdagi, S.: Analysis of the Glutamate Agonist LY404,039 Binding to Nonstatic Dopamine Receptor D2 Dimer Structures and Consensus Docking. ACS Chemical Neuroscience 8 (6), pp. 1404 - 1415 (2017)

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Salmas, R. E.; Stein, M.; Yurtsever, M.; Seeman, P.; Erol, I.; Mestanoglu, M.; Durdagi, S.: The signaling pathway of dopamine D2 receptor (D2R) activation using normal mode analysis (NMA) and the construction of pharmacophore models for D2R ligands. Journal of Biomolecular Structure and Dynamics 35 (9), pp. 2040 - 2048 (2017)

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Schiffer, J.; Hans, C. A.; Kral, T.; Ortega, R.; Raisch, J.: Modeling, Analysis and Experimental Validation of Clock Drift Effects in Low-Inertia Power Systems. IEEE Transactions on Industrial Electronics 64 (7), pp. 5942 - 5951 (2017)

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Seel, T.; Schauer, T.; Raisch, J.: Monotonic Convergence of Iterative Learning Control Systems with Variable Pass Length. International Journal of Control 90 (3), pp. 393 - 406 (2017)

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Sorrentino, A.; Vidaković-Koch, T.; Hanke-Rauschenbach, R.; Sundmacher, K.: Concentration-alternating frequency response: A new method for studying polymer electrolyte membrane fuel cell dynamics. Electrochimica Acta 243, pp. 53 - 64 (2017)

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Straube, R.: Analysis of network motifs in cellular regulation: Structural similarities, input–output relations and signal integration. Biosystems 162, pp. 2015 - 232 (2017)

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Straube, R.; Shah, M.; Flockerzi, D.; Wolf, D.A.: Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire. PLoS Computational Biology 13 (11), e1005869 (2017)

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Tapia, F.; Jordan, I.; Genzel, Y.; Reichl, U.: Efficient and stable production of Modified Vaccinia Ankara virus in two-stage semi-continuous and in continuous stirred tank cultivation systems. PLoS One 12 (8), e0182553 (2017)

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Wenzel, M.; Aditya Dharanipragada, N. V. R.; Galvita, V.; Poelman , H.; Marin, G. B.; Rihko-Struckmann, L.; Sundmacher, K.: CO production from CO₂ via reverse water–gas shift reaction performed in a chemical looping mode: Kinetics on modified iron oxide. Journal of CO₂ Utilization 17, pp. 60 - 68 (2017)

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Wenzel, M.; Rihko-Struckmann, L.; Sundmacher, K.: Thermodynamic Analysis and Optimization of RWGS Processes for Solar Syngas Production from CO2. AIChE-Journal 63 (1), pp. 15 - 22 (2017)

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Wiedmeyer, V.; Anker, F.; Bartsch, C.; Voigt, A.; John, V.; Sundmacher, K.: Continuous Crystallization in a Helically Coiled Flow Tube: Analysis of Flow Field, Residence Time Behavior, and Crystal Growth. Industrial and Engineering Chemistry Research 56 (13), pp. 3699 - 3712 (2017)

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Wiedmeyer, V.; Voigt, A.; Sundmacher, K.: Crystal Population Growth in a Continuous Helically Coiled Flow Tube Crystallizer. Chemical Engineering and Technology 40 (9), pp. 1584 - 1590 (2017)

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Yazdi, S.; Naumann, M.; Stein, M.: Double Phosphorylation-Induced Structural Changes in the Signal-Receiving Domain of IκBα in Complex with NF-κB. Proteins: Structure, Function, and Bioinformatics 85 (1), pp. 17 - 29 (2017)

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Zander, D.; Samaga, D.; Straube, R.; Bettenbrock, K.: Bistability and Nonmonotonic Induction of the lac Operon in the Natural Lactose Uptake System. Biophysical Journal 112 (9), pp. 1984 - 1996 (2017)

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Zhang, Y.; Feng, L.; Seidel-Morgenstern, A.; Benner, P.: Accelerating Optimization and Uncertainty Quantification of Nonlinear SMB Chromatography Using Reduced-Order Models. Computers & Chemical Engineering 96, pp. 237 - 247 (2017)

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Zhou, T.; Zhou, Y.; Sundmacher, K.: A hybrid stochastic-deterministic optimization approach for integrated solvent and process design. Chemical Engineering Science 159, pp. 207 - 2016 (2017)

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Zuyev, A.; Grushkovskaya, V.: Motion Planning for Control-Affine Systems Satisfying Low-Order Controllability Conditions. International Journal of Control 90 (11), pp. 2517 - 2537 (2017)

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Zuyev, A.; Seidel-Morgenstern, A.; Benner, P.: An Isoperimetric Optimal Control Problem for a Non-Isothermal Chemical Reactor with Periodic Inputs. Chemical Engineering Science 161, pp. 206 - 214 (2017)

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2016

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Ahmad, M. I.; Benner, P.; Jaimoukha, I. M.: Krylov Subspace Methods for Model Reduction of Quadratic-Bilinear Systems. IET Control Theory & Applications 10 (16), pp. 2010 - 2018 (2016)

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Benner, P.; Dolgov, S.; Onwunta, A.; Stoll, M.: Low-Rank Solvers for Unsteady Stokes-Brinkman Optimal Control Problem with Random Data. Computer Methods in Applied Mechanics and Engineering 304, pp. 26 - 54 (2016)

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Benner, P.; Goyal, P. K.: Multipoint Interpolation of Volterra Series and H₂-Model Reduction for a Family of Bilinear Descriptor Systems. Systems & Control Letters 97, pp. 1 - 11 (2016)

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Benner, P.; Kürschner, P.; Saak, J.: Frequency-Limited Balanced Truncation with Low-Rank Approximations. SIAM Journal on Scientific Computing 38 (1), pp. A471 - A499 (2016)

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Benner, P.; Kürschner, P.; Tomljanović, Z.; Truhar, N.: Semi-Active Damping Optimization of Vibrational Systems using the Parametric Dominant Pole Algorithm. Zeitschrift für Angewandte Mathematik und Mechanik 96 (5), pp. 604 - 619 (2016)

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Benner, P.; Onwunta, A.; Stoll, M.: Block-diagonal Preconditioning for Optimal Control Problems Constrained by PDEs with Uncertain Inputs. SIAM Journal on Matrix Analysis and Applications 37 (2), pp. 491 - 518 (2016)

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