Open Access Publications at MPI Magdeburg

Journal Article (388)

1. 2019
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   Keßler, T.; Kunde, C.; Mertens, N.; Michaels, D.; Kienle, A.: Global optimization of distillation columns using surrogate models. SN Applied Sciences 1 (1), 11 (2019)
2. 2018
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   Ahmad, M. I.; Feng, L.; Benner, P.: A New Two-Sided Projection Technique for Model Reduction of Quadratic-Bilinear Descriptor Systems. International Journal of Computer Mathematics (accepted)
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   Altmann, R.; Heiland, J.: Regularization and Rothe Discretization of Semi-Explicit Operator DAEs. International Journal of Numerical Analysis and Modeling 15 (3), pp. 452 - 478 (2018)
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   Antoulas, A. C.; Zhu, B.; Zhang, Q.; York, B.; O'Malley, B. W.; Dacso, C. C.: A novel mathematical method for disclosing oscillations in gene transcription: A comparative study. PLoS ONE 13 (9), e0198503 (2018)
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   Antoulas, A. C.; Benner, P.; Feng, L.: Model Reduction by Iterative Error System Approximation. Mathematical and Computer Modelling of Dynamical Systems 24 (2), pp. 103 - 118 (2018)
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   Baran, B.; Benner, P.; Heiland, J.; Saak, J.: Optimal Control of a Stefan Problem Fully Coupled with Incompressible Navier-Stokes-Equations and Mesh Movement. Analele Stiintifice ale Universitatii Ovidius Constanta - Seria Matematica 26 (2), pp. 11 - 40 (2018)
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   Baumann, M.; Astudillo, R.; Qiu, Y.; Ang, E. Y. M.; van , v. G.; Plessix, R.-E.: An MSSS-preconditioned Matrix Equation Approach for the Time-Harmonic Elastic Wave Equation at Multiple Frequencies. Computational Geosciences 22 (1), pp. 43 - 61 (2018)
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   Baumann, M.; Benner, P.; Heiland, J.: Space-time Galerkin POD with Application in Optimal Control of Semi-Linear Parabolic Partial Differential Equations. SIAM Journal on Scientific Computing 40 (3), pp. A1611 - A1641 (2018)
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   Beneyton, T.; Krafft, D.; Bednarz, C.; Kleineberg, C.; Wölfer, C.; Ivanov, I.; Vidaković-Koch, T.; Sundmacher, K.; Baret, J.-C.: Out-of-equilibrium microcompartments for the bottom-up integration of metabolic functions. Nature Communications 9, 2391 (2018)
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    Benner, P.; Mena, H.: Numerical Solution of the Infinite-Dimensional LQR Problem and the Associated Riccati Differential Equations. Journal of Numerical Mathematics 26 (1), pp. 1 - 20 (2018)
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    Benner, P.; Himpe, C.; Mitchell, T.: On Reduced Input-Output Dynamic Mode Decomposition. Advances in Computational Mathematics 44 (6), pp. 1751 - 1768 (2018)
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    Benner, P.; Khoromskaia, V.; Khoromskij, B. N.: Range-Separated Tensor Format for Many-Particle Modeling. SIAM Journal on Scientific Computing 40 (2), pp. A1034 - A1062 (2018)
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    Benner, P.; Bujanović, Z.; Kürschner, P.; Saak, J.: RADI: a Low-Rank ADI-Type Algorithm for Large Scale Algebraic Riccati Equations. Numerische Mathematik 138 (2), pp. 301 - 330 (2018)
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    Benner, P.; Heiland, J.: Exponential Stability and Stabilization of Extended Linearizations via Continuous Updates of Riccati Based Feedback. International Journal of Robust and Nonlinear Control 28 (4), pp. 1218 - 1232 (2018)
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    Benner, P.; Herzog, R.; Lang, N.; Riedel, I.; Saak, J.: Comparison of Model Order Reduction Methods for Optimal Sensor Placement for Thermo-Elastic Models. Engineering Optimization (accepted)
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    Benner, P.; Onwunta, A.; Stoll, M.: A Low-Rank Inexact Newton-Krylov Method for Stochastic Eigenvalue Problems. Computational Methods in Applied Mathematics (accepted)
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    Benner, P.; Goyal, P. K.; Gugercin, S.: H₂-Quasi-Optimal Model Order Reduction for Quadratic-Bilinear Control Systems. SIAM Journal on Matrix Analysis and Applications 39 (2), pp. 983 - 1032 (2018)
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    Benner, P.; Mitchell, T.: Faster and More Accurate Computation of the H_∞ Norm via Optimization. SIAM Journal on Scientific Computing 40 (5), pp. A3609 - A3635 (2018)
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    Bosch, J.; Kahle, C.; Stoll, M.: Preconditioning of a Coupled Cahn-Hilliard Navier-Stokes system. Communications in Computational Physics (accepted)
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    Bosch, J.; Klamt, S.; Stoll, M.: Generalizing diffuse interface methods on graphs: non-smooth potentials and hypergraphs. SIAM Journal on Applied Mathematics 78 (3), pp. 1350 - 1377 (2018)
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    Boz, E.; Tüzün, N. S.; Stein, M.: Computational investigation of the control of the thermodynamics and microkinetics of the reductive amination reaction by solvent coordination and a co-catalyst. RSC Advances 8, pp. 36662 - 36674 (2018)
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    Buchbinder, J. H.; Pischel, D.; Sundmacher, K.; Flassig, R.; Lavrik, I. N.: Quantitative single cell analysis uncovers the life/death decision in CD95 network. PLOS Computational Biology 14 (9), e1006368 (2018)
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    Carvalho, S. B.; Fortuna, A. R.; Wolff, M. W.; Peixoto, C.; Alves, P. M.; Reichl, U.; Carrondo, M. J. T.: Purification of influenza virus-like particles using sulfated cellulose membrane adsorbers. Journal of Chemical Technology and Biotechnology 93 (7), pp. 1988 - 1996 (2018)
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    Dürr, R.; Waldherr, S.: A Novel Framework for Parameter and State Estimation of Multicellular Systems Using Gaussian Mixture Approximations. Processes 6 (10), 187 (2018)
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    Edler, E.; Stein, M.: Recognition and stabilization of geranylgeranylated human Rab5 by the GDP Dissociation Inhibitor (GDI). Small GTPases (accepted)
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    Escorcia Cabrera, A. M.; Stein, M.: QM/MM Investigation of the Role of a Second Coordination Shell Arginine in [NiFe]-Hydrogenases. Frontiers in Chemistry (6), 164 (2018)
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    Freitag, M. A.; Kürschner, P.; Pestana, J.: GMRES Convergence Bounds for Eigenvalue Problems. Computational Methods in Applied Mathematics 18 (2), pp. 203 - 222 (2018)
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    Gosea, I. V.; Petreczky, M.; Antoulas, A. C.: Data-Driven Model Order Reduction of Linear Switched Systems in the Loewner Framework. SIAM Journal on Scientific Computing 40 (2), pp. B572 - B610 (2018)
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    Gosea, I. V.; Petreczky, M.; Antoulas, A. C.; Fiter, C.: Balanced truncation for linear switched systems. Advances in Computational Mathematics 44 (6), pp. 1845 - 1886 (2018)
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    Hädicke, O.; Kamp von, A.; Aydogan, T.; Klamt, S.: OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli. PLoS Computational Biology 14 (9), e1006492 (2018)
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    Hans, C. A.; Braun, P.; Raisch, J.; Grüne, L.; Reincke-Collon, C.: Hierarchical distributed model predictive control of interconnected microgrids. IEEE Transactions on Sustainable Energy (accepted)
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    Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnology and Bioengineering 115 (1), pp. 156 - 164 (2018)
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    Himpe, C.: emgr - The Empirical Gramian Framework. Algorithms 11 (7), 91 (2018)
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    Himpe, C.; Leibner, T.; Rave, S.: Hierarchical Approximate Proper Orthogonal Decomposition. SIAM Journal on Scientific Computing 40 (5), pp. A3267 - A3292 (2018)
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    Hund, M.; Saak, J.: A Connection between Time Domain Model Order Reduction and Moment Matching for LTI Systems. Mathematical and Computer Modelling of Dynamical Systems 24 (5), pp. 455 - 484 (2018)
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    Jongsma, H.-J.; Mlinarić, P.; Grundel, S.; Benner, P.; Trentelman, H. L.: Model Reduction of Linear Multi-Agent Systems by Clustering and with H₂- and H_∞-Error Bounds. Mathematics of Control, Signals, and Systems 30 (1), 6 (2018)
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    Klamt, S.; Mahadevan, R.; Hädicke, O.: When do two-stage processes outperform one-stage processes? Biotechnology Journal 13 (2), 1700539 (2018)
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    Klamt, S.; Müller, S.; Regensburger, G.; Zanghellini, J.: A mathematical framework for yield (versus rate) optimization in constraint-based modeling and applications in metabolic engineering. Metabolic Engineering 47, pp. 153 - 169 (2018)
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    Kotelnikova, E. N.; Isakov, A.; Lorenz, H.: Thermal deformations of crystal structures formed in the systems of malic acid enantiomers and L-valine–L-isoleucine enantiomers. CrystEngComm (20), pp. 2562 - 2572 (2018)
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    Kumar, V.; Naumann, M.; Stein, M.: Computational Studies on the Inhibitor Selectivity of Human JAMM Deubiquitinylases Rpn11 and CSN5. Frontiers in Chemistry 6, 480 (2018)
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    Kürschner, P.: Balanced Truncation Model Order Reduction in Limited Time Intervals for Large Systems. Advances in Computational Mathematics 44 (6), pp. 1821 - 1844 (2018)
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    Möginger, U.; Grunewald, S.; Hennig, R.; Kuo, C.-W.; Schirmeister, F.; Voth, H.; Rapp, E.; Khoo, K.-H.; Seeberger, P. H.; Simon, J. C. et al.; Kolarich, D.: Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma. Frontiers in Oncology 8 (70) (2018)
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    Muth, T.; Kohrs, F.; Heyer, R.; Benndorf, D.; Rapp, E.; Reichl, U.; Martens, L.; Renard, B. Y.: MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go. Analytical Chemistry 90, pp. 685 - 689 (2018)
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    Nikolay, A.; Léon, A.; Schwamborn, K.; Genzel, Y.; Reichl, U.: Process intensification of EB66 ^® cell cultivations leads to high-yield yellow fever and Zika virus production. Applied Microbiology and Biotechnology 102 (20), pp. 8725 - 8737 (2018)
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    Nikolay, A.; Casthilho, L. R.; Reichl, U.; Genzel, Y.: Propagation of Brazilian Zika virus strains in static and suspension cultures using Vero and BHK cells. Vaccine 36 (28), pp. 3140 - 3145 (2018)
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    Nitzschke, A.; Bettenbrock, K.: All three quinone species play distinct roles in ensuring optimal growth under aerobic and fermentative conditions in E. coli K 12. PLoS One 13 (4), 20194699 (2018)
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    Pischel, D.; Buchbinder, J.; Sundmacher, K.; Lavrik, I.; Flassig, R.: A guide to automated apoptosis detection: How to make sense of imaging flow cytometry data. PLoS ONE 13 (5), e0197208 (2018)
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    Redmann, M.; Kürschner, P.: An Output Error Bound for Time-Limited Balanced Truncation. Systems & Control Letters 121, pp. 1 - 6 (2018)
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    Rehman, A.; Ali, I.; Qamar, S.: Exact Riemann solutions of the Ripa model for flat and non-flat bottom topographies. Results in Physics 8, pp. 104 - 113 (2018)
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    Rexer, T.; Schildbach, A.; Klapproth, J.; Schierhorn, A.; Mahour, R.; Pietzsch, M.; Rapp, E.; Reichl, U.: One pot synthesis of GDP-mannose by a multi-enzyme cascade for enzymatic assembly of lipid-linked oligosaccharides. Biotechnology and Bioengineering 115 (1), pp. 192 - 205 (2018)