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OA Publications at MPI Magdeburg

Open Access Publications at MPI Magdeburg

Journal Article (305)

  1. 1.
    MPG.PuRe DOI PDF
    Antoulas, A. C.; Benner, P.; Feng, L.: Model Reduction by Iterative Error System Approximation. Mathematical and Computer Modelling of Dynamical Systems 24 (2), pp. 103 - 118 (2018)
  2. 2.
    MPG.PuRe PDF
    Baumann, M.; Benner, P.; Heiland, J.: Space-time Galerkin POD with Application in Optimal Control of Semi-Linear Parabolic Partial Differential Equations. SIAM Journal on Scientific Computing (accepted)
  3. 3.
    MPG.PuRe DOI PDF
    Baumann, M.; Astudillo, R.; Qiu, Y.; Ang, E. Y. M.; van , v. G.; Plessix, R.-E.: An MSSS-preconditioned Matrix Equation Approach for the Time-Harmonic Elastic Wave Equation at Multiple Frequencies. Computational Geosciences 22 (1), pp. 43 - 61 (2018)
  4. 4.
    MPG.PuRe DOI PDF
    Benner, P.; Mena, H.: Numerical Solution of the Infinite-Dimensional LQR Problem and the Associated Riccati Differential Equations. Journal of Numerical Mathematics 26 (1), pp. 1 - 20 (2018)
  5. 5.
    MPG.PuRe DOI PDF
    Benner, P.; Bujanović, Z.; Kürschner, P.; Saak, J.: RADI: a Low-Rank ADI-Type Algorithm for Large Scale Algebraic Riccati Equations. Numerische Mathematik 138 (2), pp. 301 - 330 (2018)
  6. 6.
    MPG.PuRe DOI PDF
    Benner, P.; Khoromskaia, V.; Khoromskij, B. N.: Range-Separated Tensor Format for Many-Particle Modeling. SIAM Journal on Scientific Computing 40 (2), pp. A1034 - A1062 (2018)
  7. 7.
    MPG.PuRe DOI
    Bosch, J.; Kahle, C.; Stoll, M.: Preconditioning of a Coupled Cahn-Hilliard Navier-Stokes system. Communications in Computational Physics (accepted)
  8. 8.
    MPG.PuRe DOI PDF
    Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnology and Bioengineering 115 (1), pp. 156 - 164 (2018)
  9. 9.
    MPG.PuRe DOI PDF
    Klamt, S.; Mahadevan, R.; Hädicke, O.: When do two-stage processes outperform one-stage processes? Biotechnology Journal 13 (2), 1700539 (2018)
  10. 10.
    MPG.PuRe DOI PDF
    Muth, T.; Kohrs, F.; Heyer, R.; Benndorf, D.; Rapp, E.; Reichl, U.; Martens, L.; Renard, B. Y.: MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go. Analytical Chemistry 90, pp. 685 - 689 (2018)
  11. 11.
    MPG.PuRe DOI PDF
    Rehman, A.; Ali, I.; Qamar, S.: Exact Riemann solutions of the Ripa model for flat and non-flat bottom topographies. Results in Physics 8, pp. 104 - 113 (2018)
  12. 12.
    MPG.PuRe DOI PDF
    Rexer, T.; Schildbach, A.; Klapproth, J.; Schierhorn, A.; Mahour, R.; Pietzsch, M.; Rapp, E.; Reichl, U.: One pot synthesis of GDP-mannose by a multi-enzyme cascade for enzymatic assembly of lipid-linked oligosaccharides. Biotechnology and Bioengineering 115 (1), pp. 192 - 205 (2018)
  13. 13.
    MPG.PuRe DOI PDF
    Rey-Jurado, E.; Tapia, F.; Muñoz-Durango, N.; Lay, M.K.; Carreño, L. J.; Riedel, C. A.; Bueno, S. M.; Genzel, Y.; Kalergis, A. M.: Assessing the Importance of Domestic Vaccine Manufacturing Centers: An Overview of Immunization Programs, Vaccine Manufacture, and Distribution. Frontiers in immunology 9, 26 (2018)
  14. 14.
    MPG.PuRe DOI PDF
    Saleem, M. R.; Ali, I.; Qamar, S.: Application of discontinuous Galerkin method for solving a compressible five-equation two-phase flow model. Results in Physics 8, pp. 379 - 390 (2018)
  15. 15.
    MPG.PuRe DOI PDF
    Wasik, M.; Eichwald, L.; Genzel, Y.; Reichl, U.: Cell culture-based production of defective interfering particles for influenza antiviral therapy. Applied Microbiology and Biotechnology 102 (3), pp. 1167 - 1177 (2018)
  16. 16.
    MPG.PuRe DOI PDF
    Abeln, M.; Borst, K. M.; Cajic, S.; Thiesler, H.; Kats, E.; Albers, I.; Kuhn, M.; Kaever, V.; Rapp, E.; Münster-Kühnel, A. et al.; Weinhold, B.: Sialylation Is Dispensable for Early Murine Embryonic Development in Vitro. ChemBioChem: A European Journal of Chemical Biology 18 (13), pp. 1305 - 1306 (2017)
  17. 17.
    MPG.PuRe DOI PDF
    Ahmad, M. I.; Szyld, D. B.; van Gijzen, M. B.: Preconditioned Multishift BiCG for H2-Optimal Model Reduction. SIAM Journal on Matrix Analysis and Applications 38 (2), pp. 401 - 424 (2017)
  18. 18.
    MPG.PuRe DOI PDF
    Aliyev, N.; Benner, P.; Mengi, E.; Schwerdtner, P.; Voigt, M.: Large-Scale Computation of L∞-Norms by a Greedy Subspace Method. SIAM Journal on Matrix Analysis and Applications 38 (4), pp. 1496 - 1516 (2017)
  19. 19.
    MPG.PuRe DOI PDF
    Altmann, R.; Heiland, J.: Simulation of Multibody Systems With Servo Constraints Through Optimal Control. Multibody System Dynamics 40 (1), pp. 75 - 98 (2017)
  20. 20.
    MPG.PuRe DOI PDF
    Benner, P.; Denißen, J.; Kohaupt, L.: Trigonometric Spline and Spectral Bounds for the Solution of Linear Time-Periodic Systems. Journal of Applied Mathematics and Computing 54 (1), pp. 127 - 157 (2017)
  21. 21.
    MPG.PuRe DOI PDF PDF
    Benner, P.; Damm, T.; Rodriguez Cruz, Y. R.: Dual Pairs of Generalized Lyapunov Inequalities and Balanced Truncation of Stochastic Linear Systems. IEEE Transactions on Automatic Control 62 (2), 7478646, pp. 782 - 791 (2017)
  22. 22.
    MPG.PuRe DOI PDF
    Benner, P.; Hossain, M.-S.: Structure Preserving Iterative Methods for Periodic Projected Lyapunov Equations and their Application in Model Reduction of Periodic Descriptor Systems. Numerical Algorithms 76 (4), pp. 881 - 904 (2017)
  23. 23.
    MPG.PuRe DOI PDF
    Benner, P.; Yücel, H.: Adaptive Symmetric Interior Penalty Galerkin Method for Boundary Control Problems. SIAM Journal on Numerical Analysis 55 (2), pp. 1101 - 1133 (2017)
  24. 24.
    MPG.PuRe DOI PDF
    Bremer, J.; Rätze, K.; Sundmacher, K.: CO2 Methanation: Optimal Start-Up Control of a Fixed-Bed Reactor for Power-To-Gas Applications. AIChE-Journal 63 (1), pp. 23 - 31 (2017)
  25. 25.
    MPG.PuRe DOI PDF
    Buchholz, H. K.; Hylton, R. K.; Brandenburg, J. G.; Seidel-Morgenstern, A.; Lorenz, H.; Stein, M.; Price, S. L.: Thermochemistry of racemic and enantiopure molecular crystals for predicting enantiomer separation. Crystal Growth & Design 17 (9), pp. 4676 - 4686 (2017)
  26. 26.
    MPG.PuRe DOI PDF
    Chen, J.; Grundel, S.; Yu, T. P. Y.: A Flexible C2 Subdivision Scheme on the Sphere: With Application to Biomembrane Modelling. SIAM Journal on Applied Algebra and Geometry 1 (1), pp. 459 - 483 (2017)
  27. 27.
    MPG.PuRe DOI PDF
    Damm, T.; Benner, P.; Hauth, J.: Computing the Stochastic H∞-Norm by a Newton Iteration. IEEE Control Systems Letters 1 (1), pp. 92 - 97 (2017)
  28. 28.
    MPG.PuRe DOI PDF
    Dolgov, S.; Stoll, M.: Low-Rank Solution to an Optimization Problem Constrained by the Navier-Stokes Equations. SIAM Journal on Scientific Computing 39 (1), pp. A255 - A280 (2017)
  29. 29.
    MPG.PuRe DOI PDF
    Eaton, J.; Grundel, S.; Gürbüzbalaban, M.; Overton, M. L.: Polynomial Root Radius Optimization with Affine Constraints. Mathematical Programming / A 165 (2), pp. 509 - 528 (2017)
  30. 30.
    MPG.PuRe DOI PDF
    Edler, E.; Stein, M.: Probing the druggability of membrane-bound Rab5 by molecular dynamics simulations. Journal of Enzyme Inhibition and Medicinal Chemistry 32 (1), pp. 434 - 443 (2017)
  31. 31.
    MPG.PuRe DOI
    Eisenschmidt, H.; Soumaya, M.; Bajcinca, N.; Le Borne, S.; Sundmacher, K.: Estimation of aggregation kernels based on Laurent polynomial approximation. Computers and Chemical Engineering 103, pp. 210 - 217 (2017)
  32. 32.
    MPG.PuRe DOI PDF PDF
    El-Sibai, A.; Rihko-Struckmann, L.; Sundmacher, K.: Model-based Optimal Sabatier Reactor Design for Power-to-Gas Applications. Energy Technology 5 (6), pp. 911 - 921 (2017)
  33. 33.
    MPG.PuRe DOI PDF
    Gerlach, M.; Abdul Wajid, D.; Hilfert, L.; Edelmann, F. T.; Seidel-Morgenstern, A.; Hamel, C.: Impact of minor amounts of hydroperoxides on rhodium-catalyzed hydroformylation of long-chain olefins. Catalysis Science & Technology 2017 (7), pp. 1465 - 1469 (2017)
  34. 34.
    MPG.PuRe DOI PDF
    Grushkovskaya , V. V.; Zuyev, A.: Two-Point Problem for Systems Satisfying the Controllability Condition with Lie Brackets of the Second Order. Journal of Mathematical Sciences 220 (3), pp. 301 - 317 (2017)
  35. 35.
    MPG.PuRe DOI PDF
    Guglielmi, N.; Gürbüzbalaban, M.; Mitchell, T.; Overton, M. L.: Approximating the Real Structured Stability Radius with Frobenius Norm Bounded Perturbations. SIAM Journal on Matrix Analysis and Applications 38 (4), pp. 1323 - 1353 (2017)
  36. 36.
    MPG.PuRe DOI PDF
    Hädicke, O.; Klamt, S.: EColiCore2: a reference model of the central metabolism of Escherichia coli and the relationships to its genome-scale parent model. Scientific Reports 7, 39647 (2017)
  37. 37.
    MPG.PuRe DOI PDF
    Kamp von, A.; Thiele, S.; Hädicke, O.; Klamt, S.: Use of CellNetAnalyzer in biotechnology and metabolic engineering. Journal of Biotechnology 261, pp. 221 - 228 (2017)
  38. 38.
    MPG.PuRe DOI PDF
    Kamp von, A.; Klamt, S.: Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms. Nature Communications 8, 15926 (2017)
  39. 39.
    MPG.PuRe DOI PDF
    Kerst, K.; Roloff, C.; Medeiros de Souza, L. G.; Bartz, A.; Seidel-Morgenstern, A.; Thévenin, D.; Janiga, G.: CFD-DEM simulations of a fluidized bed crystallizer. Chemical Engineering Science 165, pp. 1 - 13 (2017)
  40. 40.
    MPG.PuRe DOI PDF
    Klamt, S.; Regensburger, G.; Gerstl, P.M.; Jungreuthmayer, C.; Schuster, S.; Mahadevan, R.; Zanghellini, J.; Müller, S.: From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Computational Biology 13 (4), e1005409 (2017)
  41. 41.
    MPG.PuRe DOI PDF
    Kohls, E.; Stein, M.: Vibrational scaling factors for RH(I) carbonyl compounds in homogeneous cataylsis. Contributions. Section of Natural, Mathematical & Biotechnical Sciences 38 (1), pp. 43 - 56 (2017)
  42. 42.
    MPG.PuRe DOI PDF
    Kohls, E.; Stein, M.: The thermochemistry of long chain olefin isomers during hydroformylation. New Journal of Chemistry 41 (15), pp. 7347 - 7355 (2017)
  43. 43.
    MPG.PuRe DOI PDF
    Kohrs, F.; Heyer, R.; Bissinger, T.; Kottler, R.; Schallert, K.; Püttker, S.; Behne, A.; Rapp, E.; Benndorf, D.; Reichl, U.: Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community composition. Anaerobe 46, pp. 56 - 68 (2017)
  44. 44.
    MPG.PuRe DOI PDF
    Kotelnikova, E. N.; Isakov, A. I.; Lorenz, H.: Non-equimolar discrete compounds in binary chiral systems of organic substances. CrystEngComm 19 (14), pp. 1851 - 1869 (2017)
  45. 45.
    MPG.PuRe DOI PDF
    Liu, Y.; McBride, R.; Stoll, M.; Palma, A. S.; Silva, L.; Agravat, S.; Aoki-Kinoshita, K. F.; Campbell, M. P.; Costello, C. E.; Dell, A. et al.; Haslam, S. M.; Karlsson, N. G.; Khoo, K.-H.; Kolarich, D.; Novotny, M. V.; Packer, N. H.; Ranzinger, R.; Rapp, E.; Rudd, P. M.; Struwe, W. B.; Tiemeyer, M.; Wells, L.; York, W. S.; Zaia, J.; Kettner, C.; Paulson, J. C.; Feizi, T.; Smith, D. F.: The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. Glycobiology 27 (4), pp. 280 - 284 (2017)
  46. 46.
    MPG.PuRe DOI PDF
    Natarajan, M.; Faujdar, H.; Mobin, S. M.; Stein, M.; Kaur-Ghumaan, S.: A mononuclear iron carbonyl complex [Fe(μ-bdt)(CO)2(PTA)2] with bulky phosphine ligands: a model for the [FeFe] hydrogenase enzyme active site with an inverted redox potential. Dalton Transactions 46 (30), pp. 10050 - 10056 (2017)
  47. 47.
    MPG.PuRe DOI PDF
    Petrenko, A.; Stein, M.: Distal [FeS]-Cluster Coordination in [NiFe]-Hydrogenase Facilitates Intermolecular Electron Transfer. International Journal of Molecular Sciences 18 (1), 100 (2017)
  48. 48.
    MPG.PuRe DOI PDF
    Pieler, M.; Heyse, A.; Wolff, M. W.; Reichl, U.: Specific ion effects on the particle size distributions of cell culture–derived influenza A virus particles within the Hofmeister series. Engineering in Life Sciences 17 (5), pp. 470 - 478 (2017)
  49. 49.
    MPG.PuRe DOI PDF
    Pralow, A.; Hoffmann, M.; Nguyen-Khuong, T.; Rapp, E.; Reichl, U.: Improvement of the glycoproteomic toolbox with the discovery of a unique C-terminal cleavage specificity of flavastacin for N-glycosylated asparagine. Scientific Reports 7, 11419 (2017)
  50. 50.
    MPG.PuRe DOI PDF
    Prigent, S.; Frioux, C.; Dittami, S. M.; Thiele, S.; Larhlimi, A.; Collet, G.; Gutknecht, F.; Got, J.; Eveillard, D.; Bourdon, J. et al.; Plewniak, F.; Tonon, T.; Siegel, A.: Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology 13, e1005276 (2017)
 
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