Publications of A. Kremling

Saez-Rodriguez, J., Kremling, A., Conzelmann, H., Bettenbrock, K., & Gilles, E. D. (2004)Modular Analysis of Signal Transduction NetworksIEEE Control Systems Magazine, 24 (4), 35–52doi: 10.1109/MCS.2004.1316652.

Schmid, J. W., Mauch, K., Reuss, M., Gilles, E. D., & Kremling, A. (2004)Metabolic design based on a coupled gene expression-metabolic network model of tryptophan production in Escherichia coliMetabolic Engineering, 6 (4), 364–377doi: 10.1016/j.ymben.2004.06.003.

Sosa, N., Kremling, A., Ratsch, E., & Rojas, I. (2004)Web-based visualisation of the transcriptional control network of Escherichia coliIn Silico Biology, 4 (4), 507–515.

Ginkel, M., Kremling, A., Nutsch, T., Rehner, R., & Gilles, E. D. (2003)Modular modeling of cellular systems with ProMoT/DivaBioinformatics, 19, 1169–1176doi: 10.1093/bioinformatics/btg128.

Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., Cuellar, A. A., Dronov, S., Gilles, E. D., Ginkel, M., Gor, V., Goryanin, I. I., Hedley, W. J., Hodgman, T. C., Hofmeyr, J. H., Hunter, P. J., Juty, N. S., Kasberger, J. L., Kremling, A., Kummer, U., Le Novere, N., Loew, L. M., Lucio, D., Mendes, P., Minch, E., Mjolsness, E. D., Nakayama, Y., Nelson, M. R., Nielsen, P. F., Sakurada, T., Schaff, J. C., Shapiro, B. E., Shimizu, T. S., Spence, H. D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., & Wang, J. (2003)The systems biology markup language (SBML): a medium for representation and exchange of biochemical network modelsBioinformatics, 19 (4), 524–531doi: 10.1093/bioinformatics/btg015.

Kremling, A., Bettenbrock, K., Laube, B., Jahreis, K., Lengeler, J. W., & Gilles, E. D. (2001)The organization of metabolic reaction networks. III. Application for diauxic growth on glucose and lactoseMetabolic Engineering, 3 (4), 362–379doi: 10.1006/mben.2001.0199.

Kremling, A., Bettenbrock, K., Stelling, J., Reichl, U., & Gilles, E. D. (2001)Systemorientierte Bioprozesstechnik: interdisziplinäre Forschung in Biologie, System- und ComputerwissenschaftenMagdeburger Wissenschaftsjournal, 6 (1/2), 29–36.

Kremling, A. & Gilles, E. D. (2001)The organization of metabolic reaction networks - II. Signal processing in hierarchical structured functional unitsMetabolic Engineering, 3 (2), 138–150doi: 10.1006/mben.2000.0175.

Kremling, A., Jahreis, K., Lengeler, J. W., & Gilles, E. D. (2000)The organization of metabolic reaction networks: A signal-oriented approach to cellular modelsMetabolic Engineering, 2 (3), 190–200doi: 10.1006/mben.2000.0159.

Kendlbacher, T., Kremling, A., & Gilles, E. D. (1998)Modellgestützte Optimierung bei der Prozessführung bioverfahrenstechnischer Prozesseat - Automatisierungstechnik, 46 (8), 375–380doi: 10.1524/auto.1998.46.8.375.

Kremling, A., Stelling, J., Bettenbrock, K., Kremling, S., & Gilles, E. D. (2005)Metabolic networks: Biology meets engineering sciencesSystems Biology: Definitions and Perspectives215–234Berlin [u.a.]: Springerdoi: 10.1007/4735_88.

Stelling, J., Kremling, A., Ginkel, M., Bettenbrock, K., & Gilles, E. D. (2001)Towards a Virtual Biological LaboratoryFoundations of systems biology189–212.

Joy, J. & Kremling, A. (2010)Study of the growth of Escherichia coli on mixed substrates using dynamic flux balance analysisIn: IFAC Proceedings Volumes, 401–406doi: 10.3182/20100707-3-BE-2012.0059.

Disli, I., Kremling, A., & Kienle, A. (2009)A Model Based Analysis of Multiple Steady States in Continuos Cell CulturerIn: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, 796–804.

Mirschel, S., Steinmetz, K., & Kremling, A. (2009)Two different approaches for modeling biochemical reaction networks with ProMoTIn: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, 2322–2330.

Schenkendorf, R., Kremling, A., & Mangold, M. (2009)Optimal Experimental Design and Model Selection by a Sigma Point ApproachIn: Proceedings / MATHMOD 09: 6th Vienna Conference on Mathematical Modelling, 2389–2395.

Kremling, A., Bettenbrock, K., Fischer, S., Ginkel, M., Sauter, T., & Gilles, E. D. (2003)Towards whole cell in silico models for cellular systems: model set-up and model validationIn: Positive systems: proceedings of the First Multidisciplinary International Symposium on Positive Systems (POST 2003), 92–102.

Sauter, T., Kremling, A., Bettenbrock, K., Fischer, S., & Gilles, E. D. (2002)Analysis of the dynamics of the Escherichia coli glucose PTS in different time windowsIn: Abstracting and synthesizing the principles of living systems: Fifth German Workshop on Artificial Life, 33–42.

Klamt, S., Kremling, A., & Gilles, E. D. (2001)FluxAnalyzer: a graphical user interface for stoichiometric and quantitative analysis of metabolic networksIn: IFAC Proceedings Volumes, 119–124doi: 10.1016/S1474-6670(17)34206-4.

Kremling, A., Ginkel, M., & Gilles, E. D. (2001)Integrating Workbench for Modeling and Numerical Analysis of Cellular SystemsIn: IFAC Proceedings Volumes, 85–90doi: 10.1016/S1474-6670(17)34200-3.