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Journal Article (181)

  1. Journal Article
    Koschorreck, M.; Conzelmann, H.; Ebert, S.; Ederer, M.; Gilles, E. D.: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8, 336 (2007)
  2. Journal Article
    Kremling, A.; Bettenbrock, K.; Gilles, E. D.: Analysis of global control of Escherichia coli carbohydrate uptake. BMC Systems Biology 1, 42 (2007)
  3. Journal Article
    Saez-Rodriguez, J.; Simeoni, L.; Lindquist, J.; Hemenway, R.; Bommhardt, U.; Arndt, B.; Haus, U. U.; Weismantel, R.; Gilles, E. D.; Klamt, S. et al.; Schraven, B.: A logical model provides insights into T cell receptor signaling. PLoS Computational Biology 3, e163 (2007)
  4. Journal Article
    Anders, A.; Lilie, H.; Franke, K.; Kapp, L.; Stelling, J.; Gilles, E. D.; Breunig, K. D.: The galactose switch in Kluyveromyces lactis depends on nuclear competition between Gal4 and Gal1 for Gal80 binding. The Journal of Biological Chemistry 281 (39), pp. 29337 - 29348 (2006)
  5. Journal Article
    Bettenbrock, K.; Fischer, S.; Kremling, A.; Jahreis, K.; Sauter, T.; Gilles, E. D.: A quantitative approach to catabolite repression in Escherichia coli. Journal of Biological Chemistry 281, pp. 2578 - 2584 (2006)
  6. Journal Article
    Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Kholodenko, B. N.; Gilles, E. D.: A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. BMC Bioinformatics 7, 34 (2006)
  7. Journal Article
    Gilles, E. D.: Signal transduction and regulation in bacteria. Computers and Chemical Engineering 30 (10-12 ), pp. 1687 - 1699 (2006)
  8. Journal Article
    Klamt, S.; Saez-Rodriguez, J.; Lindquist, J.; Simeoni, L.; Gilles, E. D.: A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics 7, p. 56 (2006)
  9. Journal Article
    Saez-Rodriguez, J.; Mirschel, S.; Hemenway, R.; Klamt, S.; Gilles, E. D.; Ginkel, M.: Visual set-up of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 7, 506 (2006)
  10. Journal Article
    Conradi, C.; Saez-Rodriguez, J.; Gilles, E. D.; Raisch, J.: Using Chemical Reaction Network Theory to discard a Kinetic Mechanism Hypothesis. IEE Proceedings Systems Biology 152 (4), pp. 243 - 248 (2005)
  11. Journal Article
    Mangold, M.; Angeles-Palacios, O.; Ginkel, M.; Kremling, A.; Waschler, R.; Kienle, A.; Gilles, E. D.: Computer Aided Modeling of Chemical and Biological Systems: Methods, Tools, and Applications. Industrial and Engineering Chemistry Research 44 (8), pp. 2579 - 2591 (2005)
  12. Journal Article
    Nutsch, T.; Oesterhelt, D.; Gilles, E. D.; Marwan, W.: A Quantitative Model of the Switch Cycle of an Archaeal Flagellar Motor and its Sensory Control. Biophysical Journal 89 (4), pp. 2307 - 2323 (2005)
  13. Journal Article
    Saez-Rodriguez, J.; Kremling, A.; Gilles, E. D.: Dissecting the Puzzle of Life: Modularization of Signal Transduction Networks. Computers & Chemical Engineering 29, pp. 619 - 629 (2005)
  14. Journal Article
    Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Bullinger, E.; Allgöwer, F.; Gilles, E. D.: Reduction of Mathematical Models of Signal Transduction Networks: Simulation-Based Approach Applied to EGF Receptor Signalling. Systems Biology 1, pp. 159 - 169 (2004)
  15. Journal Article
    Eissing, T.; Conzelmann, H.; Gilles, E. D.; Allgöwer, F.; Bullinger, E.; Scheurich, P.: Bistability Analyses of a Caspase Activation Model for Receptor-induced Apoptosis. The Journal of Biological Chemistry 279, pp. 36892 - 36897 (2004)
  16. Journal Article
    Gilles, E. D.: Komplexität in Technik und Biologie. Akademie-Journal: Magazin der Union der Deutschen Akademien der Wissenschaften, pp. 55 - 61 (2004)
  17. Journal Article
    Klamt, S.; Gilles, E. D.: Minimal cut sets in biochemical reaction networks. Bioinformatics 20, pp. 226 - 234 (2004)
  18. Journal Article
    Kremling, A.; Heermann, R.; Centler, F.; Jung, K.; Gilles, E. D.: Analysis of two-component signal transduction by mathematical modeling using the KdpD/KdpE system of Escherichia coli. Biosystems 78 (1-3), pp. 23 - 37 (2004)
  19. Journal Article
    Kremling, A.; Kremling, S.; Gadkar, K.; Doyle, F. J.; Sauter, T.; Bullinger, E.; Allgoewer, F.; Gilles, E. D.: A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions. Genome Research 14 (9), pp. 1773 - 1785 (2004)
  20. Journal Article
    Kremling, A.; Ginkel, M.; Klamt, S.; Gilles, E. D.: Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme. it - Information Technology 46, pp. 12 - 19 (2004)
 
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