OA Publications of the Max Planck Institute

Max Planck Institute for Dynamics of Complex Technical Systems

Journal Article (1119)

2015

Journal Article

Karsten, C. B.; Büttner, F. F. R.; Cajic, S.; Nehlmeier, I.; Neumann, B.; Klippert, A.; Sauermann, U.; Reichl, U.; Gerardy-Schahn, R.; Rapp, E. et al.; Stahl-Hennig, C.; Pöhlmann, S.: Exclusive Decoration of Simian Immunodeficiency Virus Env with High-Mannose Type N-Glycans Is Not Compatible with Mucosal Transmission in Rhesus Macaques. Journal of Virology 89 (22), pp. 11727 - 11733 (2015)

MPG.PuRe

publisher-version

Journal Article

Khoromskaia, V.; Khoromskij, B. N.: Tensor numerical methods in quantum chemistry: from Hartree–Fock to excitation energies. Physical Chemistry Chemical Physics 17 (47), pp. 31491 - 31509 (2015)

MPG.PuRe

publisher-version

Journal Article

Kohrs, F.; Wolter, S.; Benndorf, D.; Heyer, R.; Hoffmann, M.; Rapp, E.; Bremges, A.; Sczyrba, A.; Schlüter, A.; Reichl, U.: Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics 15 (20), pp. 3585 - 3589 (2015)

MPG.PuRe

Journal Article

Lang, N.; Saak, J.; Benner, P.; Ihlenfeldt, S.; Nestmann, S.; Schädlich, K.: Towards the Identification of Heat Induction in Chip Removing Processes via an Optimal Control Approach. Production Engineering: Development & Research 9 (3), pp. 343 - 349 (2015)

MPG.PuRe

Journal Article

Liang, X.; Li, R.-C.: The Hyperbolic Quadratic Eigenvalue Problem. Forum of Mathematics, Sigma 3, e13 (2015)

MPG.PuRe

publisher-version

Journal Article

McBride, K.; Sundmacher, K.: Data driven conceptual process design for the hydroformylation of 1-dodecene in a thermomorphic solvent system. Industrial & Engineering Chemistry Research 54 (26), pp. 6761 - 6771 (2015)

MPG.PuRe

publisher-version

Journal Article

Michailidou, M.; Melas, I.; Messinis, D.; Klamt, S.; Alexopoulos, L.; Kolisis, F.; Loutrari, H.: Network-Based Analysis of Nutraceuticals in Human Hepatocellular Carcinomas Reveals Mechanisms of Chemopreventive Action. CPT: Pharmacometrics & Systems Pharmacology 4 (6), pp. 350 - 361 (2015)

MPG.PuRe

publisher-version

Journal Article

Mueller, S.; Huard, J.; Waldow, K.; Huang, X.; D'Alessandro, L.; Bohl, S.; Börner, K.; Grimm, D.; Klamt, S.; Klingmüller, U. et al.; Schilling, M.: T160‐phosphorylated CDK2 defines threshold for HGF‐dependent proliferation in primary hepatocytes. Molecular Systems Biology 11, 795 (2015)

MPG.PuRe

publisher-version

Journal Article

Püttker, S.; Kohrs, F.; Benndorf, D.; Heyer, R.; Rapp, E.; Reichl, U.: Metaproteomics of activated sludge from a wastewater treatment plant- a pilot study. Proteomics 15 (20), pp. 3596 - 3601 (2015)

MPG.PuRe

Journal Article

Serve, A.; Pieler, M.; Benndorf, D.; Rapp, E.; Wolff, M. W.; Reichl, U.: Comparison of Influenza Virus Particle Purification Using Magnetic Sulfated Cellulose Particles with an Established Centrifugation Method for Analytics. Analytical Chemistry 87 (21), pp. 10708 - 10711 (2015)

MPG.PuRe

publisher-version

Journal Article

Stoll, M.; Bosch, J.: Preconditioning for vector-valued Cahn-Hilliard equations. SIAM Journal on Scientific Computing 37 (5), pp. S216 - S243 (2015)

MPG.PuRe

publisher-version

Journal Article

Stoll, M.; Breiten, T.: A low-rank in time approach to PDE-constrained optimization. SIAM Journal on Scientific Computing 37 (1), pp. B1 - B29 (2015)

MPG.PuRe

publisher-version

Journal Article

Thiele, S.; Cerone, L.; Saez-Rodriguez, J.; Siegel, A.; Guciolowski, C.; Klamt, S.: Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies. BMC Bioinformatics 16 (1), 345 (2015)

MPG.PuRe

publisher-version

Journal Article

Varničić, M.; Vidaković-Koch, T.; Sundmacher, K.: Gluconic Acid Synthesis in an Electroenzymatic Reactor. Electrochimica Acta 174, pp. 480 - 487 (2015)

MPG.PuRe

publisher-version

Journal Article

Yazdi, S.; Durdagi, S.; Naumann, M.; Stein, M.: Structural modeling of the N-terminal signal–receiving domain of IκBα. frontiers in Molecular Biosciences 2, 32 (2015)

MPG.PuRe

publisher-version

supplementary-material

Journal Article

Zhang, Y.; Feng, L.; Li, S.; Benner, P.: An Efficient Output Error Estimation for Model Order Reduction of Parametrized Evolution Equations. SIAM Journal on Scientific Computing 37 (6), pp. B910 - B936 (2015)

MPG.PuRe

publisher-version

Journal Article

Zuyev, A.; Sawodny, O.: Modelling and Control of a Shell Structure Based on a Finite Dimensional Variational Formulation. Mathematical and Computer Modelling of Dynamical Systems: Methods, Tools and Applications in Engineering and Related Sciences 21 (6), pp. 591 - 612 (2015)

MPG.PuRe

publisher-version

2014

Journal Article

Benner, P.; Ezzati, P.; Quintana-Ortí, E. S.; Remón, A.: Trading Off Performance for Energy in Linear Algebra Operations with Applications in Control Theory. CLEI Electronic Journal 17 (1), 3, 12 pages (2014)

MPG.PuRe

publisher-version

Journal Article

Benner, P.; Saak, J.; Schieweck, F.; Skrzypacz, P.; Weichelt, H. K.: A Non-Conforming Composite Quadrilateral Finite Element Pair for Feedback Stabilization of the Stokes Equations. Journal of Numerical Mathematics 22 (3), pp. 191 - 220 (2014)

MPG.PuRe

publisher-version

Journal Article

Benner, P.; Stykel, T.: Numerical Solution of Projected Algebraic Riccati Equations. SIAM Journal on Numerical Analysis 52 (2), pp. 581 - 600 (2014)

MPG.PuRe

publisher-version

Journal Article

Bosch, J.; Kay, D.; Stoll, M.; Wathen, A. J.: Fast Solvers for Cahn-Hilliard Inpainting. SIAM Journal on Imaging Sciences 7 (1), pp. 67 - 97 (2014)

MPG.PuRe

publisher-version

Journal Article

Ederer, M.; Steinsiek, S.; Stagge, S.; Rolfe, M. D.; TerBeek, A.; Knies, D.; Teixeira de Mattos, M. J.; Sauter , T.; Green , J.; Poole, R. K. et al.; Bettenbrock, K.; Sawodny, O.: A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen. Frontiers in Microbiology 5, 124 (2014)

MPG.PuRe

publisher-version

Journal Article

Edler, E.; Stein, M.: Spin‐State‐Dependent Properties of an Iron(III) Hydrogenase Mimic. European Journal of Inorganic Chemistry 2014 (22), pp. 3587 - 3599 (2014)

MPG.PuRe

publisher-version

Journal Article

Erdrich, P.; Knoop, H.; Steuer, R.; Klamt, S.: Cyanobacterial biofuels: new insights and strain design strategies revealed by computational modeling. Microbial Cell Factories 13, 128 (2014)

MPG.PuRe

publisher-version

Journal Article

Flassig, R.; Maubach, G.; Täger, C.; Sundmacher, K.; Naumann, M.: Experimental design, validation and computational modeling uncover DNA damage sensing by DNA-PK and ATM. Molecular BioSystems 10 (7), pp. 1978 - 1986 (2014)

MPG.PuRe

publisher-version

Journal Article

Frensing, T.; Pflugmacher, A.; Bachmann, M.; Peschel, B.; Reichl, U.: Impact of defective interfering particles on virus replication and antiviral host response in cell culture-based influenza vaccine production. Applied Microbiology and Biotechnology 98 (21), pp. 8999 - 9008 (2014)

MPG.PuRe

Journal Article

Gilmore, K.; Kopetzki, D.; Lee, J. W.; Horvath, Z.; McQuade, D. T.; Seidel-Morgenstern, A.; Seeberger, P. H.: Continuous synthesis of artemisinin-derived medicines. Chemical Communications 50 (84), pp. 12652 - 12655 (2014)

MPG.PuRe

publisher-version

Journal Article

Henkel, S.; Beek, A. T.; Steinsiek, S.; Stagge, S.; Bettenbrock, K.; M. Joost Teixeira de Mattos, M.; Sawodny, O.; Ederer, M.; Sauter, T.: Basic Regulatory Principles of Escherichia coli's Electron Transport Chain for Varying Oxygen Conditions. PLoS One 9 (9), e107640 (2014)

MPG.PuRe

publisher-version

Journal Article

Hofmann, S.; Raisch, J.: Inversionsbasierte optimale Steuerung von Batch-Kristallisationsprozessen zur Enantiomertrennung. At-Automatisierungstechnik 62 (2), pp. 78 - 91 (2014)

MPG.PuRe

publisher-version

Journal Article

Huffman, J. E.; Pucic-Bakovic, M.; Klaric, L.; Hennig, R.; Selman, M. H.J.; Vuckovic, F.; Novokmet, M.; Kristic, J.; Borowiak, M.; Muth, T. et al.; Polasek, O.; Razdorov, G.; Gornik, O.; Plomp, R.; Theodorarou, E.; Wright, A. F.; Rudan, I.; Hayward, C.; Campbell, H.; Deelder, A. M.; Reichl, U.; Aulchenko, Y. S.; Rapp, E.; Wuhrer , M.; Lauc , G.: Comparative Performance of Four Methods for High-throughput Glycosylation Analysis of Immunoglobulin G in Genetic and Epidemiological Research. Molecular and Cellular Proteomics 13 (6), pp. 1598 - 1610 (2014)

MPG.PuRe

publisher-version

Journal Article

Kamp von, A.; Klamt, S.: Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks. PLoS Computational Biology 10 (1), e1003378 (2014)

MPG.PuRe

publisher-version

Journal Article

Kaur-Ghumaan, S.; Stein, M.: [NiFe] hydrogenases: how close do structural and functional mimics approach the active site? Dalton Transactions 43 (25), pp. 9392 - 9405 (2014)

MPG.PuRe

publisher-version

Journal Article

Lang, N.; Saak, J.; Benner, P.: Model Order Reduction for Systems with Moving Loads. at - Automatisierungstechnik 62 (7), pp. 512 - 522 (2014)

MPG.PuRe

publisher-version

Journal Article

Lohr, V.; Hädicke, O.; Genzel, Y.; Jordan, I.; Buentemeyer, H.; Klamt, S.; Reichl, U.: The avian cell line AGE1.CR.pIX characterized by metabolic flux analysis. BMC Biotechnology 14, 72 (2014)

MPG.PuRe

publisher-version

Journal Article

Lorenz, H.; Seidel-Morgenstern, A.: Processes To Separate Enantiomers. Angewandte Chemie International Edition 53 (5), pp. 1218 - 1250 (2014)

MPG.PuRe

Journal Article

Mangold, M.; Khlopov, D.; Danker, G.; Palis, S.; Svjantyj, V.; Kienle, A.: Development and Nonlinear Analysis of Dynamic Plant Models in ProMoT /Diana. Chemie Ingenieur Technik 86 (7), pp. 1107 - 1116 (2014)

MPG.PuRe

Journal Article

Orthaber, A.; Karnahl, M.; Tschierlei, S.; Streich, D.; Stein, M.; Ott, S.: Coordination and conformational isomers in mononuclear iron complexes with pertinence to the [FeFe] hydrogenase active site. Dalton Transactions 43, pp. 4537 - 4549 (2014)

MPG.PuRe

publisher-version

Journal Article

Qamar, S.; Abbasi, J. N.; Javeed, S.; Seidel-Morgenstern, A.: Analytical solutions and moment analysis of general rate model for linear liquid chromatography. Chemical Engineering Science 107, pp. 192 - 205 (2014)

MPG.PuRe

Journal Article

Qamar, S.; Bibi, S.; Khan, F. U.; Shah, M.; Javeed, S.; Seidel-Morgenstern, A.: Irreversible and Reversible Reactions in a Liquid Chromatographic Column: Analytical Solutions and Moment Analysis. Industrial and Engineering Chemistry Research 53 (6), pp. 2461 - 2472 (2014)

MPG.PuRe

Journal Article

Qamar, S.; Khan, . U.; Mehmood, Y.; Seidel-Morgenstern, A.: Analytical solution of a two-dimensional model of liquid chromatography including moment analysis. Chemical Engineering Science 116, pp. 576 - 589 (2014)

MPG.PuRe

Journal Article

Rehberg, M.; Rath, A.; Ritter, J.; Genzel, Y.; Reichl, U.: Changes in intracellular metabolite pools during growth of adherent MDCK cells in two different media. Applied Microbiology and Biotechnology 98 (1), pp. 385 - 397 (2014)

MPG.PuRe

Journal Article

Rehberg, M.; Ritter, J.; Reichl, U.: Glycolysis Is Governed by Growth Regime and Simple Enzyme Regulation in Adherent MDCK Cells. PLoS Computational Biology 10 (10), e1003885 (2014)

MPG.PuRe

publisher-version

Journal Article

Rüger, M.; Ackermann, M.; Reichl, U.: Species-specific viability analysis of Pseudomonas aeruginosa, Burkholderia cepacia and Staphylococcus aureus in mixed culture by flow cytometry. BMC Microbiology 14, 56 (2014)

MPG.PuRe

publisher-version

Journal Article

Schaber, J.; Lapytsko, A.; Flockerzi, D.: Nested autoinhibitory feedbacks alter the resistance of homeostatic adaptive biochemical networks. Interface: Journal of the Royal Society 11 (91), p. 20130971 (2014)

MPG.PuRe

publisher-version

Journal Article

Seel, T.; Raisch, J.; Schauer, T.: IMU-based joint angle measurement for gait analysis. Sensors 14 (4), pp. 6891 - 6909 (2014)

MPG.PuRe

publisher-version

Journal Article

Steinsiek, S.; Stagge, S.; Bettenbrock, K.: Analysis of Escherichia coli Mutants with a Linear Respiratory Chain. PLoS One 9 (1), e87307 (2014)

MPG.PuRe

publisher-version

Journal Article

Straube, R.: Reciprocal Regulation as a Source of Ultrasensitivity in Two-Component Systems with a Bifunctional Sensor Kinase. PLoS Computational Biology 10 (5), e1003614 (2014)

MPG.PuRe

publisher-version

Journal Article

Varničić, M.; Bettenbrock, K.; Hermsdorf, D.; Vidaković-Koch, T.; Sundmacher, K.: Combined electrochemical and microscopic study of porous enzymatic electrodes with direct electron transfer mechanism. RSC Advances 4 (69), pp. 36471 - 36479 (2014)

MPG.PuRe

publisher-version

Journal Article

York, W.S.; Agravat, S.; Aoki-Kinoshita, K.F.; Mcbride, R.; Campell, F.; Castello, C.E.; Dell, A.; Feizi, T.; Haslam, S.M.; Karlsson, N. et al.; Khoo, K.-H.; Kolarich, D.; Liu, Y.; Novotny, M.; Packer, N.H.; Paulson, J.C.; Rapp, E.; Ranzinger, R.; Rudd, P.M.; Smith, D.F.; Struwe, W.B.; Tiemeyer, M.; Wells, L.; Zaia, J.; Kettner, C.: MIRAGE: The minimum information required for a glycomics experiment. Glycobiology 24 (5), pp. 402 - 406 (2014)

MPG.PuRe

publisher-version

2013

Journal Article

Bakovic, M.P.; Selman, M.H.J.; Hoffmann, M.; Rudan, I.; Campbell, H.; Deelder, A.M.; Lauc, G.; Wuhrer, M.: High-Throughput IgG Fc N-Glycosylation Profiling by Mass Spectrometry of Glycopeptides. Journal of Proteome Research 12 (2), pp. 821 - 831 (2013)

MPG.PuRe