OA Publications of the Max Planck Institute

Journal Article

Pirwitz, K.; Rihko-Struckmann, L.; Sundmacher, K.: Valorization of the Aqueous Phase obtained from Hydrothermally Treated Dunaliella Salina Remnant Biomass. Bioresource Technology 219, pp. 64 - 71 (2016)

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Journal Article

Qamar, S.; Akram, N.; Seidel-Morgenstern, A.: Analysis of general rate model of linear chromatography considering finite rates of the adsorption and desorption steps. Chemical Engineering Research and Design 111, pp. 13 - 23 (2016)

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Journal Article

Qamar, S.; Perveen, S.; Seidel-Morgenstern, A.: Analysis of a Two-Dimensional Nonequilibrium Model of Linear Reactive Chromatography Considering Irreversible and Reversible Reactions. Industrial and Engineering Chemistry Research 55 (8), pp. 2471 - 2482 (2016)

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Journal Article

Qamar, S.; Perveen, S.; Seidel-Morgenstern, A.: Numerical Approximation of a Two-Dimensional Nonlinear and Nonequilibrium Model of Reactive Chromatography. Industrial and Engineering Chemistry Research 55 (33), pp. 9003 - 9014 (2016)

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Journal Article

Qamar, S.; Perveen, S.; Seidel-Morgenstern, A.: Numerical approximation of nonlinear and non-equilibrium two-dimensional model of chromatography. Computers and Chemical Engineering 94, pp. 411 - 427 (2016)

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Journal Article

Qamar, S.; Sattar, F. A.; Abbasi, J. N.; Seidel-Morgenstern, A.: Numerical simulation of nonlinear chromatography with core–shell particles applying the general rate model. Chemical Engineering Science 147, pp. 54 - 64 (2016)

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Journal Article

Qamar, S.; Sattar, F. A.; Seidel-Morgenstern, A.: Theoretical investigation of thermal effects in non-isothermal non-equilibrium reactive liquid chromatography. Chemical Engineering Research and Design 115 (Part A), pp. 145 - 159 (2016)

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Journal Article

Qamar, S.; Seidel-Morgenstern, A.: Extending the potential of moment analysis in chromatography. Trends in Analytical Chemistry 81, pp. 87 - 101 (2016)

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Journal Article

Rihko-Struckmann, L.; Datta, P.; Wenzel, M.; Sundmacher, K.; Dharanipragada, N.V.R.A.; Poelman, H.; Galvita, V.; Marin, G. B.: Hydrogen and Carbon Monoxide Production by Chemical Looping over Iron-Aluminium Oxides. Energy Technology 4 (2), pp. 304 - 313 (2016)

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Journal Article

Silva, J. P.; Dufrechou, E.; Ezzatti, P.; Quintana-Ortí, E. S.; Remón, A.; Benner, P.: Balancing Energy and Performance in Dense Linear System Solvers for Hybrid ARM+GPU. CLEI Electronic Journal 19 (1), 2, 13 pages (2016)

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Journal Article

Stoll, M.; Pearson, J. W.; Maini, P. K.: Fast solvers for optimal control problems from pattern formation. Journal of Computational Physics 304, pp. 27 - 45 (2016)

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Journal Article

Struwe, W.B.; Agravat, S.; Aoki-Kinoshita, K.F.; Campbell, M.P.; Costello, C.E.; Dell, A.; Ten, F.; Haslam, S.M.; Karlsson, N.G.; Khoo, K.H. et al.; Kolarich, D.; Liu, Y.; McBride , R.; Novotny, M.V.; Packer, N.H.; Paulson, J.C.; Rapp, E.; Ranzinger, R.; Rudd, P.M.; Smith, D.F.; Tiemeyer, M.; Wells , L.; York, W.S.; Zaia, J.; Kettner, C.: The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycobiology 26 (9), pp. 907 - 910 (2016)

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Journal Article

Tanca, A.; Palomba, A.; Fraumene, C.; Pagnozzi, D.; Manghina, V.; Deligios, M.; Muth, T.; Rapp, E.; Martens, L.; Addis, M. F. et al.; Uzzau, S.: The impact of sequence database choice on metaproteomic results in gut microbiota studies. Microbiome 4, 51 (2016)

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Journal Article

Tapia, F.; Vázquez-Ramirez, D.; Genzel, Y.; Reichl, U.: Bioreactors for high cell density and continuous multi-stage cultivations: options for process intensification in cell culture-based viral vaccine production. Applied Microbiology and Biotechnology 100 (5), pp. 2121 - 2132 (2016)

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Journal Article

Temmel, E.; Eicke, M.; Lorenz, H.; Seidel-Morgenstern, A.: A Short-Cut Method for the Quantification of Crystallization Kinetics. 2. Experimental Application. Crystal Growth & Design 16 (12), pp. 6756 - 6768 (2016)

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Journal Article

Temmel, E.; Eisenschmidt, H.; Lorenz, H.; Sundmacher, K.; Seidel-Morgenstern, A.: A Short-Cut Method for the Quantification of Crystallization Kinetics. 1. Method Development. Crystal Growth & Design 16 (12), pp. 6743 - 6755 (2016)

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Journal Article

ter Maten, E. J. W.; Putek, P.; Günther, M.; Pulch, R.; Tischendorf, C.; Strohm, C.; Schoenmaker, W.; Meuris, P.; de Smedt, B.; Benner, P. et al.; Feng, L.; Banagaaya, N.; Yue, Y.; Janssen, R.; Dohmen, J. J.; Tasić, B.; Deleu, F.; Gillon, R.; Wieers, A.; Brachtendorf, H.-G.; Bittner, K.; Kratochvíl, T.; Petřzela, J.; Sotner, R.; Göthans, T.; Dřínovský, J.; Schöps, S.; Duque Guerra, D. J.; Casper, T.; De Gersem, H.; Römer, U.; Reynier, P.; Barroul, P.; Masliah, D.; Rousseau, B.: Nanoelectronic COupled Problems Solutions - nanoCOPS: Modelling, Multirate, Model Order Reduction, Uncertainty Quantification, Fast Fault Simulation. Journal of Mathematics in Industry 7 (1), 2, 19 pages (2016)

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Journal Article

Thiesler, C. T.; Cajic, S.; Hoffmann, D.; Thiel, C.; van Diepen, L.; Hennig, R.; Sgodda, M.; Weißmann, R.; Reichl, U.; Steinemann, D. et al.; Diekmann, U.; Huber, N. M. B.; Oberbeck, A.; Cantz, T.; Kuss, A. W.; Körner, C.; Schambach, A.; Rapp, E.; Buettner, F. F. R.: Glycomic Characterization of Induced Pluripotent Stem Cells Derived from a Patient Suffering from Phosphomannomutase 2 Congenital Disorder of Glycosylation (PMM2-CDG). Molecular and Cellular Proteomics 15 (4), pp. 1435 - 1452 (2016)

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Journal Article

Ud-Dean, S.; Heise, S.; Klamt, S.; Gunawan, R.: TRaCE+: Ensemble inference of gene regulatory networks from transcriptional expression profiles of gene knock-out experiments. BMC Bioinformatics 17 (17), 252 (2016)

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Journal Article

Wang, W.; Voigt, A.; Sundmacher, K.: The interaction of protein-coated bionanoparticles and surface receptors reevaluated: how important is the number of bonds? Soft Matter 12 (30), pp. 6451 - 6462 (2016)

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Journal Article

Wrzosek, K.; García Rivera, M. A.; Bettenbrock, K.; Seidel-Morgenstern, A.: Racemization of undesired enantiomers: Immobilization of mandelate racemase and application in a fixed bed reactor. Biotechnology Journal 11 (4), pp. 453 - 463 (2016)

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Journal Article

Wu, H.; Kamp von, A.; Leoncikas, V.; Mori, W.; Sahin, M.; Gevorgyan, A.; Linley, C.; Grabowski, M.; Mannan, A. A.; Stoy, N. et al.; Steward, G. R.; Ward, L. T.; Lewis, D.J.M.; Sroca, J.; Matsuno, H.; Klamt, S.; Westerhoff, H.V.; McFadden, J.; Plant, N.J.; Kierzek, A.M.: MUFINS: multi-formalism interaction network simulator. npj Systems Biology and Applications 2, 16032 (2016)

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Journal Article

Yazdi, S.; Stein, M.; Elinder, F.; Andersson, M.; Lindahl, E.: The Molecular Basis of Polyunsaturated Fatty Acid Interactions with the Shaker Voltage-Gated Potassium Channel. PLoS Computational Biology 12 (1), e1004704 (2016)

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Journal Article

Zinser, A.; Sundmacher, K.: Dynamische Methode zur Berechnung thermodynamischer Gleichgewichte in reaktiven Mehrphasensystemen. Chemie Ingenieur Technik 88 (11), pp. 1617 - 1627 (2016)

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Journal Article

Zuyev, A.: Exponential Stabilization of Nonholonomic Systems by Means of Oscillating Controls. SIAM Journal on Control and Optimization 54 (3), pp. 1678 - 1696 (2016)

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2015

Journal Article

Ahuja, K.; Benner, P.; de Sturler, E.; Feng, L.: Recycling BiCGSTAB with an Application to Parametric Model Order Reduction. SIAM Journal on Scientific Computing 37 (5), pp. S429 - S446 (2015)

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Journal Article

Altmann, R.; Heiland, J.: Finite Element Decomposition and Minimal Extension for Flow Equations. ESAIM: Mathematical Modelling and Numerical Analysis 49 (5), pp. 1489 - 1509 (2015)

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Journal Article

Auer, A. A.; Cap, S.; Antonietti, M.; Cherevko, S.; Deng, X.; Papakonstantinou, G.; Sundmacher, K.; Brüller, S.; Antonyshyn, I.; Dimitratos, N. et al.; Davis, R. J.; Böhm, K.-H.; Fechler, N.; Freakley, S.; Grin, Y.; Gunnoe, B. T.; Haj-Hariri, H.; Hutchings, G.; Liang, H.; Mayrhofer, K. J. J.; Muellen, K.; Neese, F.; Ranjan, C.; Sankar, M.; Schlögl, R.; Schüth, F.; Spanos, I.; Stratmann, M.; Tüysüz, H.; Vidaković-Koch, T.; Yi , Y.; Zangari, G.: MAXNET Energy – Focusing Research in Chemical Energy Conversion on the Electrocatlytic Oxygen Evolution. Green 5 (1-6), pp. 7 - 21 (2015)

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Journal Article

Bänsch, E.; Benner, P.; Saak, J.; Weichelt, H. K.: Riccati-Based Boundary Feedback Stabilization of Incompressible Navier-Stokes Flow. SIAM Journal on Scientific Computing 37 (2), pp. A832 - A858 (2015)

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Journal Article

Benner, P.; Breiten, T.: Two-Sided Projection Methods for Nonlinear Model Order Reduction. SIAM Journal on Scientific Computing 37 (2), pp. B239 - B260 (2015)

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Journal Article

Benner, P.; Gugercin, S.; Willcox, K.: A Survey of Projection-Based Model Reduction Methods for Parametric Dynamical Systems. SIAM Review 57 (4), pp. 483 - 531 (2015)

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Journal Article

Benner, P.; Heiland, J.: Time-dependent Dirichlet Conditions in Finite Element Discretizations. ScienceOpen Research, pp. 1 - 18 (2015)

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Journal Article

Benner, P.; Onwunta, A.; Stoll, M.: Low-Rank Solution of Unsteady Diffusion Equations with Stochastic Coefficients. SIAM/ASA Journal on Uncertainty Quantification 3 (1), pp. 622 - 649 (2015)

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Journal Article

Benner, P.; Schneider, J.: Uncertainty Quantification for Maxwell's Equations Using Stochastic Collocation and Model Order Reduction. International Journal for Uncertainty Quantification 5 (3), pp. 195 - 208 (2015)

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Journal Article

Bosch, J.; Stoll, M.: A fractional inpainting model based on the vector-valued Cahn–Hilliard equation. SIAM Journal on Imaging Sciences 8 (4), pp. 2352 - 2382 (2015)

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Journal Article

D`Allessandro, L. A.; Samaga, R.; Maiwald, T.; Rho, S.-H.; Bonefas, S.; Raue, A.; Iwamoto, N.; Kienast, A.; Waldow, K.; Meyer, R. et al.; Schilling, M.; Timmer, J.; Klamt, S.; Klingmüller, U.: Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling. PLoS Computational Biology 11 (4), e1004192 (2015)

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Journal Article

Dolgov, S.; Khoromskij, B. N.; Litvinenko, A.; Matthies, H. G.: Polynomial Chaos Expansion of Random Coefficients and the Solution of Stochastic Partial Differential Equations in the Tensor Train Format. SIAM/ASA Journal on Uncertainty Quantification 3 (1), pp. 1109 - 1135 (2015)

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Journal Article

Dolgov, S. V.; Tyrtyshnikov, E. E.: On evolution of solution times for the chemical master equation of the enzymatic futile cycle. Russian Journal of Numerical Analysis and Mathematical Modelling 30 (1), pp. 37 - 42 (2015)

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Journal Article

Erdrich, P.; Steuer, R.; Klamt, S.: An algorithm for the reduction of genome-scale metabolic network models to meaningful core models. BMC Systems Biology 9, 48 (2015)

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Journal Article

Flassig, R.; Migal, I.; van der Zalm, E.; Rihko-Struckmann, L.; Sundmacher, K.: Rational selection of experimental readout and intervention sites for reducing uncertainties in computational model predictions. BMC Bioinformatics 16, 13 (2015)

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Journal Article

Gallo Ramirez, L. E.; Nikolay, A.; Genzel, Y.; Reichl, U.: Bioreactor concepts for cell culture-based viral vaccine production. Expert Review of Vaccines 14 (9), pp. 1181 - 1191 (2015)

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Journal Article

Genzel, Y.: Designing cell lines for viral vaccine production: Where do we stand? Biotechnology Journal 10 (5), pp. 728 - 740 (2015)

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Journal Article

Hädicke, O.; Bettenbrock, K.; Klamt, S.: Enforced ATP futile cycling increases specific productivity and yield of anaerobic lactate production in Escherichia coli. Biotechnology and Bioengineering 112 (10), pp. 2195 - 2199 (2015)

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Journal Article

Hädicke, O.; Klamt, S.: Manipulation of the ATP pool as a tool for metabolic engineering. Biochemical Society Transactions (London) 43 (6), pp. 1140 - 1145 (2015)

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Journal Article

Heldt, F. S.; Kupke, S. Y.; Dorl, S.; Frensing, T.; Reichl, U.: Single-cell analysis and stochastic modelling unveil large cell-to-cell variability in influenza A virus infection. Nature Communications 6, 8938 (2015)

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Journal Article

Heyer, R.; Kohrs, F.; Reichl, U.; Benndorf, D.: Metaproteomics of complex microbial communities in biogas plants. Microbial Biotechnology 8 (5), pp. 749 - 763 (2015)

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Journal Article

Hossain, M.-S.; Uddin, M. M.: Reduce Order Modelling of Power System Models Using Interpolatory Projections Technique. International Journal of Modeling and Optimization 5 (3), pp. 228 - 233 (2015)

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Journal Article

Hylton, R.; Tizzard, G. J.; Threlfall, T. L.; Ellis, A. L.; Coles, S. J.; Seaton, C. C.; Schulze, E.; Lorenz, H.; Seidel-Morgenstern, A.; Stein, M. et al.; Price, S. L.: Are the crystal structures of enantiopure and racemic mandelic acids determined by kinetics or thermodynamics? Journal of the American Chemical Society 137 (34), pp. 11095 - 11104 (2015)

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Journal Article

Karst, F.; Maestri, M.; Freund, H.; Sundmacher, K.: Reduction of Microkinetic Reaction Models for Reactor Optimization exemplified for Hydrogen Production from Methane. Chemical Engineering Journal 281, pp. 981 - 994 (2015)

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